Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LPH40_RS08475 Genome accession   NZ_CP087685
Coordinates   2070381..2071901 (+) Length   506 a.a.
NCBI ID   WP_038270967.1    Uniprot ID   Z9JJT6
Organism   Xylella taiwanensis strain PLS4A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2065381..2076901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPH40_RS08445 (LPH40_08445) rpsM 2065592..2065948 (+) 357 WP_038270958.1 30S ribosomal protein S13 -
  LPH40_RS08450 (LPH40_08450) rpsK 2065962..2066354 (+) 393 WP_038270959.1 30S ribosomal protein S11 -
  LPH40_RS08455 (LPH40_08455) rpsD 2066369..2066995 (+) 627 WP_038270961.1 30S ribosomal protein S4 -
  LPH40_RS08460 (LPH40_08460) rpoA 2067050..2068048 (+) 999 WP_038270963.1 DNA-directed RNA polymerase subunit alpha -
  LPH40_RS08465 (LPH40_08465) rplQ 2068274..2068657 (+) 384 WP_038270964.1 50S ribosomal protein L17 -
  LPH40_RS08470 (LPH40_08470) - 2070110..2070370 (+) 261 WP_038270966.1 accessory factor UbiK family protein -
  LPH40_RS08475 (LPH40_08475) comM 2070381..2071901 (+) 1521 WP_038270967.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LPH40_RS08480 (LPH40_08480) - 2073638..2074579 (+) 942 WP_230428167.1 triacylglycerol lipase -
  LPH40_RS08485 (LPH40_08485) - 2074580..2075629 (+) 1050 Protein_1671 lipase secretion chaperone -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54509.61 Da        Isoelectric Point: 7.8098

>NTDB_id=630875 LPH40_RS08475 WP_038270967.1 2070381..2071901(+) (comM) [Xylella taiwanensis strain PLS4A]
MSLALVHSRARAGVFAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAALLCACFEYPARRITINLAPADLPKEGGR
FDLPIALGILAASGQLPLDSLAGQEFLGELALTGELRAVDGVLPAALAAAQSGHRLVIPESNGAEAAIAGCCEAYTARTL
LEVCAGLCGKTLLLAAQRLDDVADALYDMPDIADVRGQEEARRVLEIAAAGGHHLLLIGSPGCGKTLLASRLPSLLPPAS
EQEALESAAIASVSGRSLDLAHWRRRPYRTPHHSASAVALIGGGGQPRPGEISLAHHGVLFMDELPEWQRQTLEGLREPM
ESGVVTIARAARSVDYPARFQLVAAMNPCPCGWAGDPSGRCQCSLDAIRRYRRRISGPLLDRIDLQLEIPRLAPHVLRPN
TPRGEHSATVRRRVTDARTLQYSRQGGLNAHLGQAVTERHCYLETADQKLLERAIEQLQLSARSMQRILRVARTIADLDG
STLIASMHLHEAIGYRRFDRTTMDMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=630875 LPH40_RS08475 WP_038270967.1 2070381..2071901(+) (comM) [Xylella taiwanensis strain PLS4A]
ATGAGCTTGGCGTTGGTGCATAGCCGTGCCCGTGCTGGAGTGTTTGCACCTCCAGTTAGGGTTGAAGTGCATTTGTCCGG
CGGTCTGCCTGCCACACAGATCGTCGGCTTGCCTGAGGCTGCTGTGCGTGAATCCAGAGATCGAGTACGTGCAGCATTAT
TGTGTGCTTGCTTTGAATATCCAGCACGGCGCATCACCATTAACTTGGCGCCCGCTGACTTGCCCAAGGAAGGCGGACGC
TTTGATTTGCCGATTGCATTAGGGATCCTAGCCGCTAGTGGTCAACTGCCACTCGATTCTTTAGCAGGGCAGGAGTTCCT
CGGTGAACTTGCACTCACTGGAGAACTTCGTGCGGTTGACGGTGTGTTACCTGCGGCTCTGGCTGCAGCACAGTCAGGAC
ACCGGCTGGTGATACCAGAAAGCAATGGTGCCGAGGCAGCGATCGCTGGGTGTTGTGAGGCTTACACCGCCCGCACTCTA
CTCGAGGTTTGCGCTGGGTTGTGCGGCAAAACACTACTGCTCGCTGCTCAGAGGCTCGACGATGTGGCTGATGCGTTGTA
TGACATGCCTGACATTGCTGACGTGCGTGGTCAAGAGGAGGCGCGCCGTGTCCTTGAAATTGCTGCAGCTGGTGGTCATC
ACCTGTTGTTGATTGGTAGTCCTGGTTGCGGTAAAACTCTTTTAGCTTCGAGATTACCAAGCCTACTACCACCAGCAAGC
GAGCAAGAAGCATTGGAGAGTGCGGCGATTGCTTCGGTTAGTGGGCGTAGTTTGGATCTAGCTCATTGGCGCCGACGTCC
CTATCGTACTCCCCACCATAGTGCCAGTGCGGTTGCACTAATTGGTGGCGGGGGACAGCCACGTCCGGGTGAGATCTCGC
TCGCCCATCATGGTGTGCTATTCATGGACGAATTGCCCGAATGGCAACGGCAAACCCTGGAAGGGTTACGTGAGCCCATG
GAGTCTGGTGTAGTGACGATTGCTCGTGCCGCACGTAGCGTGGATTATCCTGCCCGCTTTCAGTTAGTTGCTGCGATGAA
CCCCTGCCCCTGTGGTTGGGCAGGTGATCCGAGTGGACGTTGTCAATGTAGCTTGGATGCAATTCGACGTTATCGTCGCC
GTATTTCTGGGCCGTTGCTGGACCGCATTGACCTACAGTTGGAAATACCACGGTTGGCACCGCATGTACTACGTCCTAAC
ACACCGCGTGGTGAACATAGTGCTACAGTTCGGCGGCGCGTCACTGATGCCCGTACTTTACAATATAGTCGGCAGGGGGG
GCTTAATGCACATTTGGGTCAAGCAGTGACCGAGCGTCACTGCTATTTGGAGACGGCTGACCAGAAGTTGCTGGAACGTG
CGATCGAACAGTTGCAGCTATCGGCACGTTCGATGCAACGGATTTTACGCGTAGCACGCACGATTGCTGACTTGGATGGA
AGCACATTAATCGCCAGCATGCACTTACACGAGGCAATTGGATATCGCCGATTCGACCGTACTACCATGGACATGGCTTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Z9JJT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.2

98.814

0.536
  comM Vibrio campbellii strain DS40M4

52.157

100

0.526
  comM Glaesserella parasuis strain SC1401

51.779

100

0.518
  comM Haemophilus influenzae Rd KW20

52.087

99.407

0.518
  comM Legionella pneumophila str. Paris

50.602

98.419

0.498
  comM Legionella pneumophila strain ERS1305867

50.602

98.419

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443