Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NQS38_RS05705 Genome accession   NZ_CP104496
Coordinates   1206243..1206779 (+) Length   178 a.a.
NCBI ID   WP_011000383.1    Uniprot ID   Q8Y2B4
Organism   Ralstonia pseudosolanacearum strain Gj707     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1201243..1211779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQS38_RS05690 (NQS38_05690) - 1201380..1201865 (-) 486 WP_011000380.1 adenosine-specific kinase -
  NQS38_RS05695 (NQS38_05695) uvrA 1201945..1204809 (-) 2865 WP_011000381.1 excinuclease ABC subunit UvrA Machinery gene
  NQS38_RS05700 (NQS38_05700) - 1205032..1206195 (+) 1164 WP_016726609.1 MFS transporter -
  NQS38_RS05705 (NQS38_05705) ssb 1206243..1206779 (+) 537 WP_011000383.1 single-stranded DNA-binding protein Machinery gene
  NQS38_RS05710 (NQS38_05710) - 1206949..1207445 (+) 497 Protein_1123 transposase -
  NQS38_RS05715 (NQS38_05715) - 1207485..1208498 (+) 1014 WP_038938784.1 IS110 family transposase -
  NQS38_RS05720 (NQS38_05720) - 1209236..1209493 (-) 258 WP_011000385.1 hypothetical protein -
  NQS38_RS05725 (NQS38_05725) - 1209523..1210032 (-) 510 WP_016724277.1 hotdog family protein -
  NQS38_RS05730 (NQS38_05730) - 1210029..1210850 (-) 822 WP_011000387.1 beta-ketoacyl synthase chain length factor -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18697.54 Da        Isoelectric Point: 5.9786

>NTDB_id=629786 NQS38_RS05705 WP_011000383.1 1206243..1206779(+) (ssb) [Ralstonia pseudosolanacearum strain Gj707]
MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFGRLAEIAGEYLKKGSQVYVEG
RLKTRQWEKDGQKQYSTEIVAEQMQMLGSRQGMGGEGGGGGGGYSRGESSGGGGYGGGRAQGGGGMSRGEGGGGQGGGAR
RQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=629786 NQS38_RS05705 WP_011000383.1 1206243..1206779(+) (ssb) [Ralstonia pseudosolanacearum strain Gj707]
ATGGCGTCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCGCCGATCCCGAAACGCGTTACATGCCGAGCGGCGACGC
CGTCACCAATATCCGCGTGGCGACCACCGACCGCTACAAGGACAAGGCCAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCATCGCCTTCTTCGGCCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGTTCGCAGGTCTACGTCGAAGGT
CGCCTCAAGACCCGCCAGTGGGAGAAGGACGGCCAGAAACAGTACAGCACCGAAATCGTCGCCGAGCAGATGCAGATGCT
CGGCAGCCGCCAGGGCATGGGCGGCGAGGGCGGTGGCGGCGGTGGTGGCTACTCGCGCGGCGAATCGTCGGGCGGTGGCG
GTTACGGCGGTGGCCGTGCCCAGGGCGGCGGCGGTATGAGCCGCGGCGAAGGCGGTGGTGGTCAGGGCGGCGGCGCGCGC
CGTCAGCAGGCGCCTTCGAATGGGTTTGAGGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.462

100

0.517
  ssb Vibrio cholerae strain A1552

47.027

100

0.489
  ssb Neisseria meningitidis MC58

43.575

100

0.438
  ssb Neisseria gonorrhoeae MS11

43.017

100

0.433
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.079

100

0.371