Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   N596_RS07025 Genome accession   NC_022584
Coordinates   1517915..1519093 (+) Length   392 a.a.
NCBI ID   WP_023024812.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1512915..1524093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS07005 (N596_07190) - 1514661..1515412 (-) 752 Protein_1396 response regulator transcription factor -
  N596_RS10375 (N596_07195) - 1515413..1516732 (-) 1320 WP_023027428.1 sensor histidine kinase -
  N596_RS09770 (N596_07200) - 1516732..1516875 (-) 144 WP_023024808.1 bacteriocin -
  N596_RS07020 (N596_07210) rlmH 1517233..1517712 (-) 480 WP_023024810.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  N596_RS07025 (N596_07215) htrA 1517915..1519093 (+) 1179 WP_023024812.1 S1C family serine protease Regulator
  N596_RS07030 (N596_07220) spo0J 1519159..1519920 (+) 762 WP_023024814.1 ParB/RepB/Spo0J family partition protein Regulator
  N596_RS07035 (N596_07225) dnaA 1520200..1521540 (+) 1341 WP_373364509.1 chromosomal replication initiator protein DnaA -
  N596_RS07040 (N596_07230) dnaN 1521701..1522837 (+) 1137 WP_023027430.1 DNA polymerase III subunit beta -
  N596_RS07045 (N596_07235) - 1522901..1523092 (+) 192 WP_023024820.1 DUF951 domain-containing protein -
  N596_RS07050 (N596_07240) - 1523280..1523774 (-) 495 WP_023024822.1 DUF1307 domain-containing protein -

Sequence


Protein


Download         Length: 392 a.a.        Molecular weight: 41272.52 Da        Isoelectric Point: 5.1240

>NTDB_id=62964 N596_RS07025 WP_023024812.1 1517915..1519093(+) (htrA) [Streptococcus ilei]
MKQSSNFLKKALQLLLVLVIGFTGGILGTLTSFQFTKGNSANSSQEIKSTKVNRAYKNTTSTSEAVDKVKNAVVSVITYA
ETSEKGFINGETDSDPEVASEGSGVIYKKDGKDAYVVTNAHVLMGATEADILFADGNKVSGEVVGSDTFSDIAVVKISSD
NVTTVAEFGDSSKLTVGETAIAIGSPLGTKFANSVTQGIVSSLGRTVKLKSEDGQNVSTKALQTDAAINPGNSGGPLINI
QGQVIGITSSKISSNGQTAVEGMGFAIPVNDVQNIIEHLEKDGKVIRPALGITMMDLASLSSSDLSQLDIPSKLKGGVLV
RSVENDMPASKHLRRLDIITKIDDTTIESTADLQSALYSHQIGDEIKVIFYRDGKQKTATIELTKSTENLGN

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=62964 N596_RS07025 WP_023024812.1 1517915..1519093(+) (htrA) [Streptococcus ilei]
ATGAAACAATCATCAAATTTTCTAAAAAAAGCTTTGCAACTTTTACTTGTTCTTGTCATTGGTTTTACTGGAGGAATTTT
AGGAACCTTAACCTCTTTCCAGTTTACCAAAGGGAATTCTGCAAATTCTAGCCAAGAAATAAAATCTACCAAAGTCAATC
GAGCTTATAAGAATACAACATCAACTAGTGAAGCTGTTGATAAGGTTAAAAATGCAGTTGTTTCTGTTATTACCTACGCT
GAAACCTCTGAAAAAGGCTTTATTAATGGAGAAACAGATTCTGATCCAGAAGTGGCTAGTGAAGGTTCAGGTGTTATCTA
TAAAAAAGATGGTAAAGATGCTTATGTAGTAACCAATGCTCATGTATTGATGGGAGCAACAGAAGCCGATATTCTCTTTG
CAGACGGAAATAAAGTATCTGGAGAGGTTGTTGGTTCAGATACTTTCTCAGATATTGCGGTTGTTAAAATCAGTTCAGAC
AACGTTACGACCGTGGCTGAATTTGGGGATTCATCTAAATTGACCGTCGGAGAGACCGCAATCGCTATTGGTAGTCCTTT
AGGGACAAAATTTGCCAATTCCGTTACCCAAGGGATTGTTTCTAGTCTTGGACGTACTGTGAAGCTCAAATCAGAAGACG
GTCAAAATGTGTCTACAAAAGCTTTGCAAACGGATGCTGCAATCAACCCAGGGAATTCTGGTGGTCCCCTTATCAATATT
CAGGGACAAGTCATCGGAATTACCTCAAGTAAAATTTCTTCAAATGGGCAAACTGCGGTTGAAGGAATGGGATTTGCTAT
TCCTGTAAATGATGTGCAAAATATTATTGAACATTTAGAAAAAGATGGTAAAGTCATTCGTCCAGCACTTGGAATTACCA
TGATGGACCTGGCTAGTCTATCCTCTTCTGATCTTAGCCAATTAGACATTCCAAGCAAACTCAAAGGTGGGGTTCTTGTT
CGCTCAGTTGAAAATGATATGCCGGCATCCAAACATTTACGTCGATTAGATATCATTACAAAAATCGATGATACAACCAT
TGAATCAACTGCAGATTTACAATCTGCCCTCTATTCTCATCAAATTGGTGATGAAATCAAAGTCATTTTCTATAGAGATG
GTAAGCAAAAAACAGCAACCATTGAACTTACAAAATCAACAGAAAATCTTGGAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

62.944

100

0.633

  htrA Streptococcus pneumoniae Rx1

63.01

100

0.63

  htrA Streptococcus pneumoniae D39

63.01

100

0.63

  htrA Streptococcus pneumoniae TIGR4

63.01

100

0.63

  htrA Streptococcus pneumoniae R6

63.01

100

0.63

  htrA Streptococcus mitis NCTC 12261

62.755

100

0.628

  htrA Streptococcus mutans UA159

52

100

0.531


Multiple sequence alignment