Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   N596_RS04320 Genome accession   NC_022584
Coordinates   892604..893305 (-) Length   233 a.a.
NCBI ID   WP_023027098.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 887604..898305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS04300 (N596_04440) rnc 888986..889687 (-) 702 WP_042361176.1 ribonuclease III -
  N596_RS04305 (N596_04445) - 889846..890235 (-) 390 WP_373364506.1 YbaN family protein -
  N596_RS04310 (N596_04450) vicX 890447..891256 (-) 810 WP_023027096.1 MBL fold metallo-hydrolase Regulator
  N596_RS04315 (N596_04455) micB 891265..892611 (-) 1347 WP_023027097.1 cell wall metabolism sensor histidine kinase VicK Regulator
  N596_RS04320 (N596_04460) micA 892604..893305 (-) 702 WP_023027098.1 response regulator YycF Regulator
  N596_RS04325 (N596_04465) thrS 893677..895620 (-) 1944 WP_023027099.1 threonine--tRNA ligase -
  N596_RS10415 - 895653..895842 (-) 190 Protein_858 hypothetical protein -
  N596_RS04330 (N596_04470) - 896006..897328 (-) 1323 WP_023027100.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26652.69 Da        Isoelectric Point: 4.7896

>NTDB_id=62953 N596_RS04320 WP_023027098.1 892604..893305(-) (micA) [Streptococcus ilei]
MKKILVVDDEKPISDIIKFNMVKEGYEVLTAFDGKEALAVFEAENPDILILDLMLPEIDGLEVARTIRKTSNVPIIVLSA
KDTVFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTELTVESQTESISDSDIVIGDLKIIPDAFLAQKKGKELELTH
REFELLYHLATHVGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNND

Nucleotide


Download         Length: 702 bp        

>NTDB_id=62953 N596_RS04320 WP_023027098.1 892604..893305(-) (micA) [Streptococcus ilei]
ATGAAGAAAATTCTTGTTGTAGATGATGAAAAGCCGATTTCGGATATTATAAAATTCAATATGGTGAAAGAAGGTTATGA
AGTCTTGACTGCCTTCGATGGGAAAGAAGCACTGGCTGTTTTCGAAGCTGAGAACCCAGATATTTTGATTCTGGACCTCA
TGCTTCCTGAAATTGATGGTTTGGAAGTAGCGCGTACCATTCGAAAGACCAGTAATGTACCGATTATTGTCCTATCTGCT
AAAGATACCGTATTTGATAAGGTTATCGGTCTTGAAATTGGTGCGGATGACTATGTGACTAAGCCATTCTCAAATCGTGA
GCTTCAAGCTCGCGTAAAAGCTTTGTTGCGTCGGACAGAACTAACGGTAGAATCACAGACAGAGTCTATATCAGATTCAG
ATATTGTGATTGGTGATTTGAAAATCATTCCGGATGCCTTCCTTGCTCAGAAAAAAGGCAAAGAGCTCGAGCTGACCCAT
CGCGAATTTGAGTTGCTCTATCACTTGGCGACCCATGTAGGGCAAGTCATGACCCGTGAGCATTTACTGGAAACAGTCTG
GGGCTACGATTATTTTGGAGATGTTCGGACAGTGGACGTAACGATTCGACGTTTGCGTGAAAAAATCGAAGATATTCCAG
GTCGTCCGGAGTATATTTTAACGCGCCGCGGTGTCGGTTACTATATGAGAAACAATGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

80.258

100

0.803
  vicR Streptococcus mutans UA159

77.119

100

0.781
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.589

99.142

0.442
  covR Streptococcus salivarius strain HSISS4

41.048

98.283

0.403

Multiple sequence alignment