Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   N596_RS00960 Genome accession   NC_022584
Coordinates   170254..171204 (+) Length   316 a.a.
NCBI ID   WP_023026611.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 165254..176204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS00940 (N596_00970) - 165350..166513 (+) 1164 WP_023022707.1 MFS transporter -
  N596_RS00945 (N596_00975) - 166597..167886 (+) 1290 WP_023026608.1 DUF1958 domain-containing protein -
  N596_RS00950 (N596_00980) - 168361..168912 (+) 552 WP_023026609.1 hypothetical protein -
  N596_RS00955 (N596_00985) - 169275..169829 (+) 555 WP_023026610.1 hypothetical protein -
  N596_RS00960 (N596_00990) coiA 170254..171204 (+) 951 WP_023026611.1 competence protein CoiA Machinery gene
  N596_RS00965 (N596_00995) pepF 171275..173077 (+) 1803 WP_023026612.1 oligoendopeptidase F Regulator
  N596_RS00970 (N596_01000) - 173079..173792 (+) 714 WP_023026613.1 O-methyltransferase -
  N596_RS00975 (N596_01005) - 173870..174811 (+) 942 WP_023026614.1 peptidylprolyl isomerase -
  N596_RS00980 (N596_01010) - 175102..175584 (+) 483 WP_006596642.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 37824.58 Da        Isoelectric Point: 9.3290

>NTDB_id=62941 N596_RS00960 WP_023026611.1 170254..171204(+) (coiA) [Streptococcus ilei]
MFIATDAKQQRWNCLEKIPMKKEGPFFCLLCGKEVRLKKGVVMRPHFAHVSLEACPFHHETESPEHLELKLGLYQWAKQN
SDAEVESPLQAFQQIADVLLPDQKIALEVQCSSLSMERLKERSDAYRKHGYQVYWLLGKNLWLKKSLSALQEGFVYFSQN
RGFHLWELDLEKQEVRLHYLIHQDLRGRLYYRTQHFPFYGGNLLEVLRTPYAQQNLQQMTVPLDRQFKDYLRQQLYYRHS
KWMALQEQLYLKGKHLLELDLEAFYPLCRPLKSSHFIQIRGDWRSYYQDFMTYYRSTGMKATQTLYSPRFYQNGKA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=62941 N596_RS00960 WP_023026611.1 170254..171204(+) (coiA) [Streptococcus ilei]
ATGTTTATTGCGACAGATGCAAAGCAACAGCGTTGGAATTGTTTGGAGAAGATCCCGATGAAAAAGGAAGGTCCTTTTTT
CTGTCTCTTGTGTGGAAAGGAAGTCCGCTTAAAGAAAGGGGTCGTGATGCGTCCTCATTTTGCTCACGTTAGCCTAGAGG
CTTGCCCCTTTCATCATGAGACGGAAAGTCCCGAACATCTAGAGTTAAAGCTGGGGCTTTATCAATGGGCCAAGCAAAAC
TCAGATGCTGAAGTAGAAAGTCCTCTGCAGGCTTTCCAACAGATTGCGGATGTTCTCCTTCCGGATCAAAAGATTGCCTT
AGAAGTGCAATGTAGTTCCTTGTCTATGGAGCGTTTGAAAGAACGGAGCGATGCCTATCGCAAGCATGGTTATCAGGTCT
ATTGGTTGTTAGGGAAAAACTTGTGGCTTAAGAAAAGCTTGTCTGCTCTGCAAGAAGGTTTTGTCTATTTTAGTCAAAAT
AGGGGCTTTCATCTCTGGGAGTTGGACCTAGAGAAGCAGGAAGTTCGTCTCCACTATCTCATTCATCAAGACTTGCGAGG
GCGTCTTTATTATCGGACTCAACATTTTCCTTTTTATGGAGGGAATCTGTTAGAAGTTTTGCGGACGCCTTATGCCCAAC
AAAACTTGCAACAAATGACAGTCCCTCTAGACAGACAGTTTAAGGACTATCTTCGTCAACAGCTGTACTACCGGCATTCT
AAATGGATGGCTCTTCAGGAACAACTCTATCTGAAAGGAAAGCATCTCCTGGAATTGGACTTGGAAGCTTTTTATCCCCT
TTGTCGGCCGCTGAAGTCTTCCCATTTTATCCAGATTAGGGGAGATTGGCGAAGCTATTACCAGGACTTTATGACCTACT
ATCGTTCAACTGGAATGAAAGCGACGCAGACTCTTTATTCACCTCGTTTTTATCAGAATGGGAAAGCTTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

49.359

98.734

0.487
  coiA Streptococcus pneumoniae TIGR4

48.718

98.734

0.481
  coiA Streptococcus pneumoniae Rx1

48.397

98.734

0.478
  coiA Streptococcus pneumoniae D39

48.397

98.734

0.478
  coiA Streptococcus pneumoniae R6

48.397

98.734

0.478
  coiA Lactococcus lactis subsp. cremoris KW2

40.498

100

0.411

Multiple sequence alignment