Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   N596_RS00965 Genome accession   NC_022584
Coordinates   171275..173077 (+) Length   600 a.a.
NCBI ID   WP_023026612.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 166275..178077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS00945 (N596_00975) - 166597..167886 (+) 1290 WP_023026608.1 DUF1958 domain-containing protein -
  N596_RS00950 (N596_00980) - 168361..168912 (+) 552 WP_023026609.1 hypothetical protein -
  N596_RS00955 (N596_00985) - 169275..169829 (+) 555 WP_023026610.1 hypothetical protein -
  N596_RS00960 (N596_00990) coiA 170254..171204 (+) 951 WP_023026611.1 competence protein CoiA Machinery gene
  N596_RS00965 (N596_00995) pepF 171275..173077 (+) 1803 WP_023026612.1 oligoendopeptidase F Regulator
  N596_RS00970 (N596_01000) - 173079..173792 (+) 714 WP_023026613.1 O-methyltransferase -
  N596_RS00975 (N596_01005) - 173870..174811 (+) 942 WP_023026614.1 peptidylprolyl isomerase -
  N596_RS00980 (N596_01010) - 175102..175584 (+) 483 WP_006596642.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69151.27 Da        Isoelectric Point: 4.6158

>NTDB_id=62942 N596_RS00965 WP_023026612.1 171275..173077(+) (pepF) [Streptococcus ilei]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEATALAAAIKDAAHFAGSLLSSPANLLETTEVYLDLSRRLEKVYVYAHMKND
QDTRVAKYQEFQSKAMSLYSLLGETFAFYEPEFMEITEEQYANFLKEVPALEAYAHYFDKLLKTKEHVLSQKEEELLAGA
GEIFAAAGETFEILDNADIVFPMVKDDQGQKVQLTHGNYISLVESKDRQVRKEAYQALYGVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPESVYDSLVEAVNKHLPLLQRYVKLRSKILGIEDLKMYDVYTPLSSTDYKFTYEEALA
KSEQALAVLGDDYLSRVKRAFTERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEQLLAEVEDDETRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDKDKYLEYLKAGNSDYPL
NVIRKAGVDMEKEDYLNAAFEVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=62942 N596_RS00965 WP_023026612.1 171275..173077(+) (pepF) [Streptococcus ilei]
ATGGTAAAACAACGAAATGAAATTGATGAAAAATACCAATGGGATTTGTCAACCATTTTTGCGACAGACCAAGCTTGGGA
AGAAGAAGCAACTGCTTTAGCTGCAGCGATTAAAGATGCTGCCCATTTTGCAGGCTCTTTATTGTCTTCTCCAGCCAACC
TATTAGAAACAACAGAAGTTTATTTGGACTTGAGCCGTCGTTTGGAGAAGGTCTATGTCTACGCCCATATGAAGAATGAT
CAGGATACGCGCGTAGCCAAATACCAAGAATTCCAATCAAAAGCCATGTCCCTTTACAGCCTTTTAGGGGAGACTTTTGC
CTTCTACGAACCAGAATTTATGGAGATCACCGAAGAGCAATATGCCAACTTCTTGAAAGAAGTCCCTGCCTTAGAAGCTT
ATGCTCATTACTTTGACAAATTGCTCAAAACCAAAGAGCACGTTCTTTCTCAAAAAGAAGAAGAATTGCTAGCAGGAGCG
GGTGAAATCTTTGCTGCTGCGGGTGAAACCTTTGAGATTCTGGACAATGCCGATATCGTCTTCCCAATGGTGAAAGATGA
CCAAGGGCAAAAAGTGCAGTTGACTCATGGAAACTATATTTCTTTGGTAGAGTCGAAGGATCGCCAAGTCCGTAAGGAAG
CTTACCAAGCCTTGTATGGTGTCTACGAACAGTACCAACATACTTATGCCAAGACCCTTCAGACCAACGTCAAGGTCCAC
AATTACAATGCTAAGGTTCGCAAATTCTCTAGCGCGCGTGAAGCAGCTCTTTCTGCTAACTTTATCCCAGAGAGCGTCTA
TGATAGCTTGGTAGAAGCGGTTAACAAGCATTTGCCTTTGTTACAACGCTACGTGAAACTTCGCTCAAAAATCTTGGGAA
TTGAAGATTTGAAGATGTATGATGTCTACACACCATTGTCTTCTACTGATTACAAGTTCACCTACGAAGAAGCCCTTGCT
AAATCTGAGCAGGCTTTGGCGGTGCTTGGTGATGATTACCTATCCCGCGTGAAGCGCGCCTTCACCGAACGTTGGATCGA
CGTCCATGTCAACCAAGGGAAACGCTCAGGGGCCTATTCAGGTGGTTCATACGATACCAATGCCTTTATGTTGTTAAACT
GGCAAGATACATTGGACAACCTCTTCACCTTGGTGCATGAAACTGGTCACAGTATGCATTCTAGCTATACACGTGAGACC
CAACCTTATGTCTATGGAGATTATTCTATCTTCCTTGCTGAGATTGCTTCCACAACCAATGAAAATATCTTGACTGAGCA
ATTGTTGGCAGAAGTAGAAGATGATGAAACCCGTTTTGCCATTCTCAACCACTTCTTGGATGGTTTCCGTGGTACCGTCT
TCCGTCAAACCCAGTTTGCTGAGTTTGAGCATGCCATTCATAAAGCAGATCAAGAAGGACAAGTCTTGACCAGCGAATTC
TTGAATGAGCTCTATGCGGACTTGAACGAGAAATACTATGGTCTTTCTAAAGAAGACAATCCAGAAATCCAATACGAATG
GGCTCGTATTCCTCATTTCTACTATAACTACTATGTTTTCCAATATTCAACCGGTTTTGCAGCAGCTTCTGCCTTGGCTG
AGAAAATCGTTCATGGAACACAAGAAGATAAGGACAAATATCTAGAGTATTTGAAGGCCGGAAATTCAGATTACCCACTC
AACGTCATCCGCAAGGCGGGTGTTGATATGGAAAAAGAAGACTACCTCAATGCCGCCTTTGAAGTCTTTGAACGTCGTCT
CAATGAATTTGAGGCCCTGGTTGAAAAATTAGGATTGGCCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.463

99.333

0.69

Multiple sequence alignment