Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   N597_RS06115 Genome accession   NC_022582
Coordinates   1244247..1244948 (-) Length   233 a.a.
NCBI ID   WP_042507520.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1239247..1249948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS06095 (N597_06290) rnc 1240629..1241330 (-) 702 WP_042361176.1 ribonuclease III -
  N597_RS06100 (N597_06295) - 1241489..1241878 (-) 390 WP_398575107.1 YbaN family protein -
  N597_RS06105 (N597_06300) vicX 1242090..1242899 (-) 810 WP_023023917.1 MBL fold metallo-hydrolase Regulator
  N597_RS06110 (N597_06305) micB 1242908..1244254 (-) 1347 WP_023023919.1 cell wall metabolism sensor histidine kinase VicK Regulator
  N597_RS06115 (N597_06310) micA 1244247..1244948 (-) 702 WP_042507520.1 response regulator YycF Regulator
  N597_RS06120 (N597_06315) - 1245524..1246573 (+) 1050 WP_023023923.1 DUF389 domain-containing protein -
  N597_RS06125 (N597_06320) thrS 1246933..1248876 (-) 1944 WP_023023925.1 threonine--tRNA ligase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26673.58 Da        Isoelectric Point: 4.6664

>NTDB_id=62916 N597_RS06115 WP_042507520.1 1244247..1244948(-) (micA) [Streptococcus ilei]
MKKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLMLPEIDGLEVARTIRKTSNVPIIVLSA
KDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTELTVESQTESTSDSDIVIGDLKIIPDAFLAQKKGKELELTH
REFELLYHLATHVDQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNND

Nucleotide


Download         Length: 702 bp        

>NTDB_id=62916 N597_RS06115 WP_042507520.1 1244247..1244948(-) (micA) [Streptococcus ilei]
ATGAAGAAAATTCTTGTTGTAGATGATGAAAAGCCGATTTCGGATATTATAAAATTCAATATGGCCAAAGAAGGCTATGA
AGTCTTGACTGCCTTCGATGGAAAAGAAGCACTGGCTGTTTTCGAAGCTGAGAGCCCAGATATTTTGATCTTGGACCTCA
TGCTTCCTGAAATTGATGGTTTGGAAGTAGCGCGTACCATTCGAAAGACCAGTAATGTACCGATTATTGTCTTATCTGCA
AAAGATACAGAATTTGATAAGGTCATCGGTCTTGAAATTGGTGCGGATGACTATGTGACTAAGCCATTCTCAAATCGTGA
GCTTCAAGCTCGCGTAAAAGCTTTGTTGCGTCGGACAGAACTAACGGTAGAATCACAGACAGAGTCTACATCAGATTCAG
ATATTGTGATTGGTGATTTGAAAATCATTCCGGATGCCTTCCTTGCTCAGAAAAAAGGCAAAGAGCTCGAGTTGACCCAT
CGCGAATTTGAGTTGCTCTATCACTTGGCGACCCATGTAGACCAAGTCATGACCCGTGAGCATTTGCTGGAAACAGTCTG
GGGCTACGATTATTTTGGGGATGTTCGGACAGTGGACGTAACGATTCGACGTTTGCGTGAAAAAATCGAAGATATTCCAG
GCCGTCCGGAGTATATTTTAACGCGCCGCGGTGTCGGTTACTATATGAGAAACAATGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

80.258

100

0.803
  vicR Streptococcus mutans UA159

77.119

100

0.781
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.589

99.142

0.442
  covR Streptococcus salivarius strain HSISS4

41.048

98.283

0.403

Multiple sequence alignment