Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   N597_RS06105 Genome accession   NC_022582
Coordinates   1242090..1242899 (-) Length   269 a.a.
NCBI ID   WP_023023917.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1237090..1247899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS06090 (N597_06285) smc 1237093..1240638 (-) 3546 WP_023023910.1 chromosome segregation protein SMC -
  N597_RS06095 (N597_06290) rnc 1240629..1241330 (-) 702 WP_042361176.1 ribonuclease III -
  N597_RS06100 (N597_06295) - 1241489..1241878 (-) 390 WP_398575107.1 YbaN family protein -
  N597_RS06105 (N597_06300) vicX 1242090..1242899 (-) 810 WP_023023917.1 MBL fold metallo-hydrolase Regulator
  N597_RS06110 (N597_06305) micB 1242908..1244254 (-) 1347 WP_023023919.1 cell wall metabolism sensor histidine kinase VicK Regulator
  N597_RS06115 (N597_06310) micA 1244247..1244948 (-) 702 WP_042507520.1 response regulator YycF Regulator
  N597_RS06120 (N597_06315) - 1245524..1246573 (+) 1050 WP_023023923.1 DUF389 domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29702.64 Da        Isoelectric Point: 5.7538

>NTDB_id=62914 N597_RS06105 WP_023023917.1 1242090..1242899(-) (vicX) [Streptococcus ilei]
MDEKGFKYSILASGSSGNSFYLETPKKKILVDAGLSGKKITGLLAEIDRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEATWKAMEGSKYLGKVDDSQKHLFEMGKTVTFGDLDVESFGVSHDAAAPQFYRFMKDGKSFVMLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNKTKKIYLGHLSKENNIKELAHMTMVN
QLARADLAVGHDFDVLDTSPDTATPLVDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=62914 N597_RS06105 WP_023023917.1 1242090..1242899(-) (vicX) [Streptococcus ilei]
ATGGATGAAAAAGGGTTTAAGTATAGTATTTTAGCTTCGGGTTCGAGTGGTAATTCATTTTACCTAGAGACACCTAAGAA
AAAAATTCTAGTAGATGCAGGCTTGTCCGGGAAGAAGATTACAGGTTTGCTTGCAGAAATTGATCGAAAACCCGAAGATC
TTGACGCTATTTTGATTACACATGAACATTCAGATCACATTCATGGTGTTGGTGTACTAGCTCGTAAATACGGGATGGAC
CTATACGCCAATGAAGCTACATGGAAGGCCATGGAGGGAAGCAAGTACCTTGGGAAGGTTGATGACTCCCAGAAACATCT
TTTTGAAATGGGCAAGACCGTAACCTTCGGGGATTTGGATGTGGAAAGTTTTGGTGTCAGTCATGATGCTGCAGCTCCCC
AGTTCTATCGTTTCATGAAGGATGGGAAGAGTTTTGTCATGCTGACGGATACAGGTTATGTCAGTGATCGAATGGCAGGG
ATTGTTGAAAATGCAGATGGCTATTTGATCGAGTCCAACCACGATGTGGAAATCCTACGAGCTGGCTCTTATGCTTGGCG
ATTAAAGCAGCGGATTTTATCTGATTTGGGCCACCTCTCTAATGAAGATGGTGCAGATGCCATGATTCGGACTCTAGGCA
ATAAGACCAAAAAGATTTATCTGGGCCACTTATCCAAGGAAAACAATATCAAGGAATTGGCCCATATGACCATGGTCAAT
CAACTGGCTCGAGCAGATCTAGCAGTGGGGCATGATTTTGACGTCTTGGATACATCTCCAGATACAGCGACTCCATTAGT
AGATATCTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781

Multiple sequence alignment