Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LO008_RS15645 Genome accession   NZ_CP087351
Coordinates   3207297..3208115 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain DB003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3202297..3213115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO008_RS15630 pilE 3202516..3202941 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  LO008_RS15635 pilY2 3202938..3203420 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  LO008_RS15640 pilY1 3203431..3207285 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  LO008_RS15645 pilX 3207297..3208115 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO008_RS15650 pilW 3208112..3209113 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LO008_RS15655 pilV 3209114..3209674 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LO008_RS15660 fimU 3209668..3210141 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO008_RS15665 ispH 3210311..3211261 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO008_RS15670 gmk 3211384..3212013 (+) 630 WP_000015937.1 guanylate kinase -
  LO008_RS15675 rpoZ 3212086..3212364 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO008_RS15680 - 3212403..3212533 (+) 131 Protein_3069 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=629066 LO008_RS15645 WP_000149374.1 3207297..3208115(-) (pilX) [Acinetobacter baumannii strain DB003]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=629066 LO008_RS15645 WP_000149374.1 3207297..3208115(-) (pilX) [Acinetobacter baumannii strain DB003]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993