Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   N597_RS02590 Genome accession   NC_022582
Coordinates   502437..503387 (+) Length   316 a.a.
NCBI ID   WP_023022714.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 497437..508387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS02570 (N597_02660) - 497853..499016 (+) 1164 WP_023022707.1 MFS transporter -
  N597_RS02575 (N597_02665) - 499100..500389 (+) 1290 WP_023022708.1 D-alanyl-D-alanine carboxypeptidase family protein -
  N597_RS02580 (N597_02670) - 500746..501297 (+) 552 WP_023022710.1 hypothetical protein -
  N597_RS02585 (N597_02675) - 501458..502012 (+) 555 WP_023022712.1 hypothetical protein -
  N597_RS02590 (N597_02680) coiA 502437..503387 (+) 951 WP_023022714.1 competence protein CoiA Machinery gene
  N597_RS02595 (N597_02685) - 503556..503765 (+) 210 WP_023022716.1 hypothetical protein -
  N597_RS02600 (N597_02690) pepF 503834..505636 (+) 1803 WP_023022717.1 oligoendopeptidase F Regulator
  N597_RS02605 (N597_02695) - 505638..506351 (+) 714 WP_023022719.1 O-methyltransferase -
  N597_RS02610 (N597_02700) prsA 506429..507370 (+) 942 WP_023022721.1 peptidylprolyl isomerase PrsA -
  N597_RS02615 (N597_02705) - 507662..508144 (+) 483 WP_023022723.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 37941.74 Da        Isoelectric Point: 9.5431

>NTDB_id=62904 N597_RS02590 WP_023022714.1 502437..503387(+) (coiA) [Streptococcus ilei]
MFIATDAKQQRWNCLEKIPMKKEGPFFCLLCGKEVRLKKGSVMRPHFAHVSLEACPFHHETESPEHLELKLALYQWAKQH
SNAEVESSLQVFQQIADILLPDQKLALEVQCSSLSMERLKERSDAYRKHGYQVYWLLGKNLWLKKSLSALQEGFVYFSQN
RGFHLWELDLEQQEVRLHYLIHQDLRGRLHYRTQHFPFYGGNLLDVLRTPYAQQGLQRMTVSLDRQFKDYLRQQLYYRHP
KWMALQEQLYLKGKHLLELDLEAFYPLCRPLKSRNFIQIRGDWQAYYQNFMTYYRSTGMKATQTLYSPRFYQNWKA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=62904 N597_RS02590 WP_023022714.1 502437..503387(+) (coiA) [Streptococcus ilei]
ATGTTTATTGCGACAGATGCAAAGCAACAGCGTTGGAATTGTTTGGAGAAGATCCCGATGAAAAAGGAAGGTCCTTTTTT
CTGTCTCCTGTGTGGAAAGGAAGTTCGCTTAAAGAAAGGGTCCGTGATGCGTCCTCATTTTGCTCACGTTAGCTTAGAGG
CTTGCCCCTTCCATCATGAAACGGAGAGTCCAGAGCATTTGGAGTTAAAGCTGGCACTTTATCAATGGGCCAAGCAACAC
TCCAATGCTGAAGTAGAAAGTTCTCTGCAGGTTTTCCAACAGATTGCGGATATTCTCCTTCCAGATCAAAAGCTTGCCTT
AGAAGTGCAATGTAGTTCCTTGTCCATGGAGCGTTTAAAAGAACGGAGCGATGCCTATCGCAAGCATGGTTATCAAGTTT
ACTGGTTGCTAGGGAAAAACTTATGGCTCAAGAAAAGCCTGTCAGCTCTGCAAGAAGGTTTTGTCTATTTTAGTCAAAAT
AGGGGCTTTCATCTCTGGGAGTTGGATCTAGAGCAACAGGAAGTTCGGCTCCACTATCTGATCCATCAAGACTTGCGAGG
GCGTCTTCATTATCGGACTCAACATTTTCCTTTTTATGGAGGGAATTTGTTAGATGTTTTGCGGACCCCCTATGCCCAAC
AAGGCTTGCAACGAATGACGGTCTCTCTAGACAGACAGTTTAAGGACTATCTTCGTCAACAGCTGTATTACCGGCATCCT
AAGTGGATGGCCCTCCAAGAACAACTCTATCTGAAAGGAAAGCATCTCCTGGAGTTGGACTTGGAAGCCTTTTATCCCCT
GTGTCGGCCACTGAAGTCTAGGAATTTTATTCAGATTAGGGGAGACTGGCAAGCCTATTATCAGAACTTTATGACCTACT
ATCGTTCAACTGGAATGAAAGCGACGCAGACTCTTTATTCACCTCGTTTTTATCAGAACTGGAAAGCTTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

49.682

99.367

0.494
  coiA Streptococcus pneumoniae TIGR4

47.771

99.367

0.475
  coiA Streptococcus pneumoniae Rx1

47.452

99.367

0.472
  coiA Streptococcus pneumoniae D39

47.452

99.367

0.472
  coiA Streptococcus pneumoniae R6

47.452

99.367

0.472
  coiA Lactococcus lactis subsp. cremoris KW2

40.81

100

0.415

Multiple sequence alignment