Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   N597_RS02600 Genome accession   NC_022582
Coordinates   503834..505636 (+) Length   600 a.a.
NCBI ID   WP_023022717.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 498834..510636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS02575 (N597_02665) - 499100..500389 (+) 1290 WP_023022708.1 D-alanyl-D-alanine carboxypeptidase family protein -
  N597_RS02580 (N597_02670) - 500746..501297 (+) 552 WP_023022710.1 hypothetical protein -
  N597_RS02585 (N597_02675) - 501458..502012 (+) 555 WP_023022712.1 hypothetical protein -
  N597_RS02590 (N597_02680) coiA 502437..503387 (+) 951 WP_023022714.1 competence protein CoiA Machinery gene
  N597_RS02595 (N597_02685) - 503556..503765 (+) 210 WP_023022716.1 hypothetical protein -
  N597_RS02600 (N597_02690) pepF 503834..505636 (+) 1803 WP_023022717.1 oligoendopeptidase F Regulator
  N597_RS02605 (N597_02695) - 505638..506351 (+) 714 WP_023022719.1 O-methyltransferase -
  N597_RS02610 (N597_02700) prsA 506429..507370 (+) 942 WP_023022721.1 peptidylprolyl isomerase PrsA -
  N597_RS02615 (N597_02705) - 507662..508144 (+) 483 WP_023022723.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69152.21 Da        Isoelectric Point: 4.5702

>NTDB_id=62905 N597_RS02600 WP_023022717.1 503834..505636(+) (pepF) [Streptococcus ilei]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEATALAAAIKDAAHFAGSLLSSPANLLETTEVYLDLSRRLEKVYVYAHMKND
QDTRVAKYQEFQSKAMSLYSLLGETFAFYEPEFMEITEEQYANFLKEVPALEAYAHYFDKLLKTKEHVLSQKEEELLAGA
GEIFAAAGETFEILDNADIVFPMVKDDQGQEVQLTHGNYISLVESKDRQVRKEAYQALYGVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPESVYDSLVEAVNKHLPLLQRYVKLRSKILGIEDLKMYDVYTPLSSTDYKFTYEEALA
KSEQALAVLGDDYLSRVKRAFTERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEQLLAEVEDDETRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDKDKYLEYLKAGNSDYPL
NVIRKAGVDMEKEDYLNAAFEVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=62905 N597_RS02600 WP_023022717.1 503834..505636(+) (pepF) [Streptococcus ilei]
ATGGTAAAACAACGAAATGAAATTGATGAAAAATACCAATGGGATTTGTCGACCATTTTTGCGACAGACCAAGCTTGGGA
GGAAGAAGCAACTGCCTTAGCTGCAGCCATTAAAGATGCTGCTCATTTTGCAGGTTCTTTATTGTCTTCTCCAGCCAACC
TATTAGAAACCACAGAAGTTTATTTGGACTTGAGCCGTCGTTTGGAGAAGGTTTATGTCTACGCCCATATGAAGAATGAC
CAGGACACACGCGTAGCCAAATACCAAGAATTCCAATCAAAAGCCATGTCCCTATACAGCCTTTTAGGGGAGACCTTTGC
CTTCTACGAACCAGAATTTATGGAGATCACCGAAGAGCAATATGCCAACTTCTTGAAAGAAGTCCCTGCTTTAGAAGCTT
ATGCTCATTACTTTGACAAATTGCTCAAAACCAAAGAGCATGTCCTTTCTCAAAAAGAAGAAGAATTGTTAGCAGGAGCA
GGTGAAATCTTTGCTGCAGCGGGTGAAACTTTTGAGATCTTGGACAATGCAGATATTGTCTTCCCAATGGTGAAGGATGA
CCAAGGCCAAGAAGTTCAGTTGACACATGGAAACTATATTTCTTTGGTTGAGTCGAAGGACCGCCAAGTCCGTAAGGAAG
CTTACCAGGCTTTGTATGGTGTCTACGAACAGTACCAACACACCTATGCTAAGACCCTTCAGACCAACGTCAAGGTTCAC
AATTACAATGCCAAGGTTCGCAAATTCTCAAGTGCGCGTGAGGCAGCTCTTTCTGCTAACTTTATCCCAGAAAGCGTCTA
TGATAGTTTGGTAGAAGCGGTGAACAAGCACTTGCCACTCTTGCAACGCTACGTGAAACTCCGCTCAAAAATCTTGGGAA
TTGAAGATTTGAAGATGTATGATGTCTACACGCCACTGTCTTCTACTGATTACAAGTTCACCTATGAGGAAGCTCTTGCT
AAATCTGAGCAGGCTTTGGCGGTGCTTGGTGATGACTACCTATCACGCGTGAAGCGCGCCTTCACTGAACGTTGGATCGA
CGTCCATGTCAACCAAGGGAAACGCTCAGGAGCTTATTCAGGTGGATCGTACGACACCAATGCCTTTATGTTGTTGAACT
GGCAAGATACATTGGATAATCTCTTCACCTTAGTGCATGAGACTGGCCACAGTATGCATTCTAGCTATACCCGTGAAACC
CAACCTTATGTCTATGGGGATTATTCTATCTTCCTTGCTGAGATTGCTTCCACAACAAATGAAAATATCTTGACCGAGCA
ATTATTGGCAGAAGTAGAAGATGATGAAACCCGTTTTGCCATTCTCAACCATTTCTTGGATGGCTTCCGTGGTACAGTCT
TCCGTCAAACCCAGTTTGCTGAGTTTGAACATGCGATTCACAAGGCCGACCAAGAAGGACAAGTCTTGACCAGCGAATTC
TTGAATGAGCTGTATGCAGACTTGAACGAGAAATATTATGGTCTTTCAAAAGAAGATAACCCAGAAATCCAATACGAATG
GGCTCGCATTCCTCATTTCTACTATAACTACTATGTTTTCCAATATTCAACTGGTTTTGCAGCAGCCTCTGCCTTGGCTG
AGAAAATCGTGCATGGAACACAGGAAGATAAGGACAAATACCTAGAGTATTTGAAGGCCGGAAATTCGGATTATCCACTC
AACGTGATCCGCAAGGCGGGTGTCGATATGGAAAAAGAAGACTACCTCAATGCAGCCTTTGAAGTCTTTGAACGTCGTCT
CAATGAATTTGAGGCCCTGGTTGAAAAATTAGGATTGGCCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.463

99.333

0.69

Multiple sequence alignment