Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   N4267_RS05090 Genome accession   NZ_CP104354
Coordinates   1093188..1094192 (+) Length   334 a.a.
NCBI ID   WP_000568491.1    Uniprot ID   Q9KR02
Organism   Vibrio cholerae strain PNUSAV001140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1088188..1099192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4267_RS05065 (N4267_05065) lpxH 1089015..1089755 (-) 741 WP_069216743.1 UDP-2,3-diacylglucosamine diphosphatase -
  N4267_RS05070 (N4267_05070) - 1089796..1090290 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  N4267_RS05075 (N4267_05075) cysS 1090436..1091815 (+) 1380 WP_032475306.1 cysteine--tRNA ligase -
  N4267_RS05080 (N4267_05080) ruvC 1091903..1092424 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  N4267_RS05085 (N4267_05085) ruvA 1092518..1093132 (+) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  N4267_RS05090 (N4267_05090) ruvB 1093188..1094192 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  N4267_RS05095 (N4267_05095) cydA 1094651..1096237 (+) 1587 WP_000568055.1 cytochrome ubiquinol oxidase subunit I -
  N4267_RS05100 (N4267_05100) cydB 1096255..1097391 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  N4267_RS05105 (N4267_05105) cydX 1097404..1097511 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  N4267_RS05110 (N4267_05110) ybgE 1097504..1097821 (+) 318 WP_001286620.1 cyd operon protein YbgE -
  N4267_RS05115 (N4267_05115) ybgC 1097990..1098397 (+) 408 WP_001091290.1 tol-pal system-associated acyl-CoA thioesterase -
  N4267_RS05120 (N4267_05120) tolQ 1098387..1099070 (+) 684 WP_000123083.1 protein TolQ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37298.75 Da        Isoelectric Point: 5.0460

>NTDB_id=628886 N4267_RS05090 WP_000568491.1 1093188..1094192(+) (ruvB) [Vibrio cholerae strain PNUSAV001140]
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=628886 N4267_RS05090 WP_000568491.1 1093188..1094192(+) (ruvB) [Vibrio cholerae strain PNUSAV001140]
ATGATAGAAGCCGATCGTTTAATCGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTTTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCAGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCGCAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTTCGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCCATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAAGGTTATTTACAACGTACACCACGAGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.682

96.108

0.593
  ruvB Streptococcus pneumoniae TIGR4

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae R6

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae D39

59.937

94.91

0.569
  ruvB Synechocystis sp. PCC 6803

55.663

92.515

0.515
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494