Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   N4267_RS05085 Genome accession   NZ_CP104354
Coordinates   1092518..1093132 (+) Length   204 a.a.
NCBI ID   WP_000580350.1    Uniprot ID   A0ABX9FGD2
Organism   Vibrio cholerae strain PNUSAV001140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1087518..1098132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4267_RS05060 (N4267_05060) - 1087705..1088919 (-) 1215 WP_057554791.1 EAL and HDOD domain-containing protein -
  N4267_RS05065 (N4267_05065) lpxH 1089015..1089755 (-) 741 WP_069216743.1 UDP-2,3-diacylglucosamine diphosphatase -
  N4267_RS05070 (N4267_05070) - 1089796..1090290 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  N4267_RS05075 (N4267_05075) cysS 1090436..1091815 (+) 1380 WP_032475306.1 cysteine--tRNA ligase -
  N4267_RS05080 (N4267_05080) ruvC 1091903..1092424 (+) 522 WP_000111359.1 crossover junction endodeoxyribonuclease RuvC -
  N4267_RS05085 (N4267_05085) ruvA 1092518..1093132 (+) 615 WP_000580350.1 Holliday junction branch migration protein RuvA Machinery gene
  N4267_RS05090 (N4267_05090) ruvB 1093188..1094192 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  N4267_RS05095 (N4267_05095) cydA 1094651..1096237 (+) 1587 WP_000568055.1 cytochrome ubiquinol oxidase subunit I -
  N4267_RS05100 (N4267_05100) cydB 1096255..1097391 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  N4267_RS05105 (N4267_05105) cydX 1097404..1097511 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  N4267_RS05110 (N4267_05110) ybgE 1097504..1097821 (+) 318 WP_001286620.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22049.75 Da        Isoelectric Point: 5.0954

>NTDB_id=628885 N4267_RS05085 WP_000580350.1 1092518..1093132(+) (ruvA) [Vibrio cholerae strain PNUSAV001140]
MIGRLRGTLIEKLPPQILIEIGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVNERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=628885 N4267_RS05085 WP_000580350.1 1092518..1093132(+) (ruvA) [Vibrio cholerae strain PNUSAV001140]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAACTCCCGCCACAAATTTTGATTGAAATCGGCGGGATTGGCTATGA
AGTACAAATGCCGATGAGTTGTATTTACGAACTTCCCAATATTGGTGAAGAAGCCATCATCTATACTCATTTTGTTGTGC
GGGAAGATGCGCAGCTATTGTACGGATTTAACACGGTCAATGAGCGAGCACTCTTTCGCGAGGTGATCAAAGCTAATGGG
GTGGGGCCCAAAATGGGGCTCGCAATACTTTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGATCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATCCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363