Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CENROD_RS05500 Genome accession   NC_022576
Coordinates   1337742..1339277 (+) Length   511 a.a.
NCBI ID   WP_041194145.1    Uniprot ID   -
Organism   Candidatus Symbiobacter mobilis CR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1332742..1344277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CENROD_RS05480 - 1333339..1333596 (+) 258 WP_151194591.1 hypothetical protein -
  CENROD_RS05485 (Cenrod_1217) - 1333911..1334756 (-) 846 WP_022772234.1 DUF3800 domain-containing protein -
  CENROD_RS05490 (Cenrod_1218) amt 1335432..1337042 (-) 1611 WP_022772238.1 ammonium transporter -
  CENROD_RS05495 (Cenrod_1219) glnK 1337195..1337533 (-) 339 WP_022772242.1 P-II family nitrogen regulator -
  CENROD_RS05500 (Cenrod_1220) comM 1337742..1339277 (+) 1536 WP_041194145.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CENROD_RS05505 (Cenrod_1221) priA 1339353..1341536 (+) 2184 WP_022772250.1 replication restart helicase PriA -
  CENROD_RS05510 (Cenrod_1222) - 1341677..1341934 (+) 258 WP_022772254.1 PepSY domain-containing protein -
  CENROD_RS05515 (Cenrod_1223) - 1341948..1342538 (+) 591 WP_022772258.1 cytochrome b/b6 domain-containing protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 54127.95 Da        Isoelectric Point: 7.9091

>NTDB_id=62861 CENROD_RS05500 WP_041194145.1 1337742..1339277(+) (comM) [Candidatus Symbiobacter mobilis CR]
MSLAFVQSRALVGMAAPAVTVEVHLSNGLPSFTLVGLADVEVREARERVRSAILNANLEFPHNRRIIVNLAPADLPKDSG
RFDLPIAVGILAASGQIDAARIAGHEFAGELSLSAELRPIRGALAMALASCSAQPPTRLVLPTASAQEAALVPTASVYGA
AHLLDVVQHFAAQEGRIATDAPIGCERVYPLPTATAATYPDLADVKGQAAARRALEIAAAGEHSVVLVGPPGSGKSMLAE
RFAGLLPPMDLEESLQCAAIASVGGQFSLEHWGRRPTRRPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDEFPEFPKT
ALEALREPLETGTISISRAAQRCEFPARFQLIAAMNPCPCGYLGSAQAPCRCTPDQVARYQGKLSGPLMDRIDLHVEVPA
VDVQDLLHAPRSESSASVRARCLAARERALARQGKPNRSLQGEELDQSLQLDAAATKLLHAAAQRLRWSARSTHRALKVA
RTIADLADSATTQAAHVAEAIQYRRVLRSAP

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=62861 CENROD_RS05500 WP_041194145.1 1337742..1339277(+) (comM) [Candidatus Symbiobacter mobilis CR]
GTGAGCCTCGCGTTCGTACAAAGCCGGGCGCTGGTGGGGATGGCAGCGCCAGCGGTCACGGTAGAAGTCCACCTGTCCAA
CGGCCTGCCCAGCTTCACCCTGGTGGGGCTGGCGGATGTCGAAGTGCGGGAAGCGCGCGAGCGGGTTCGCTCGGCCATCC
TGAACGCGAACCTGGAATTCCCGCACAACCGGCGCATCATCGTCAACCTGGCCCCGGCCGATCTGCCGAAAGATTCGGGC
CGCTTCGACTTGCCCATCGCCGTCGGCATCCTCGCAGCGAGCGGGCAAATCGACGCTGCTCGCATCGCCGGCCACGAATT
TGCCGGGGAGCTTTCGCTATCGGCAGAGCTGCGCCCGATTCGCGGCGCGCTCGCCATGGCGCTGGCGTCGTGCTCCGCGC
AACCGCCCACGCGCCTGGTATTGCCAACGGCCAGCGCGCAGGAAGCCGCCCTCGTGCCCACGGCCTCGGTCTACGGCGCT
GCGCACCTGCTCGACGTGGTGCAGCACTTTGCGGCGCAAGAAGGAAGGATCGCAACGGATGCTCCCATCGGGTGCGAACG
TGTGTATCCCCTCCCCACGGCGACTGCGGCTACCTACCCCGATCTCGCTGACGTCAAAGGCCAGGCTGCCGCACGCAGGG
CGCTCGAAATCGCCGCAGCAGGGGAACACAGCGTGGTGCTCGTCGGCCCGCCGGGGTCAGGCAAGTCGATGCTGGCCGAA
CGTTTTGCCGGGCTGTTGCCGCCGATGGACTTGGAGGAATCCTTGCAGTGCGCGGCCATTGCCAGCGTGGGGGGGCAGTT
CTCGCTAGAGCACTGGGGTCGACGACCCACGCGCCGCCCGCACCACACGGCCAGCGCCGTGGCCCTGGTCGGCGGAGGTT
CCCCACCGCGCCCCGGCGAGATTTCGCTGGCGCACCACGGCGTGCTGTTCCTCGACGAGTTCCCCGAATTCCCCAAAACC
GCGCTCGAAGCGCTGCGCGAACCGCTGGAGACGGGGACGATCTCGATTTCCCGCGCTGCGCAACGCTGCGAATTCCCCGC
GCGCTTTCAGCTCATCGCTGCGATGAACCCCTGCCCGTGCGGGTACCTGGGTTCGGCGCAAGCGCCGTGCCGATGCACCC
CAGACCAGGTGGCGCGCTACCAGGGCAAACTCAGCGGCCCGCTGATGGACCGCATCGACCTGCACGTCGAAGTACCCGCC
GTCGATGTGCAAGACCTGCTGCACGCACCCCGCTCCGAATCCAGCGCCAGCGTTCGCGCTCGGTGCCTCGCAGCCCGGGA
ACGCGCGCTGGCGCGGCAAGGCAAGCCCAACCGTTCTTTGCAGGGCGAGGAACTCGACCAGTCCCTGCAACTTGATGCCG
CAGCGACCAAACTGCTGCACGCCGCTGCCCAACGCCTGCGCTGGTCCGCCCGCAGTACCCACCGTGCCCTGAAAGTGGCG
CGCACTATCGCCGACCTGGCAGACAGCGCCACAACCCAGGCCGCCCACGTGGCCGAGGCCATTCAGTACCGCCGCGTGCT
GCGCTCTGCGCCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-405)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.196

99.804

0.501
  comM Vibrio campbellii strain DS40M4

49.216

99.804

0.491
  comM Haemophilus influenzae Rd KW20

48.438

100

0.485
  comM Glaesserella parasuis strain SC1401

48.425

99.413

0.481
  comM Legionella pneumophila str. Paris

47.945

100

0.479
  comM Legionella pneumophila strain ERS1305867

47.945

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.278

100

0.429

Multiple sequence alignment