Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   LO005_RS01605 Genome accession   NZ_CP087309
Coordinates   340924..341406 (+) Length   160 a.a.
NCBI ID   WP_029424121.1    Uniprot ID   A0AAX0TXI4
Organism   Acinetobacter baumannii strain OC068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335924..346406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS01595 pilX 336227..337045 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO005_RS01600 pilY1 337057..340911 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  LO005_RS01605 pilY2 340924..341406 (+) 483 WP_029424121.1 type IV pilin protein Machinery gene
  LO005_RS01610 pilE 341403..341828 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene
  LO005_RS01615 rpsP 341975..342226 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  LO005_RS01620 rimM 342246..342794 (+) 549 WP_005130741.1 ribosome maturation factor RimM -
  LO005_RS01625 trmD 342840..343580 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LO005_RS01630 rplS 343788..344156 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  LO005_RS01635 - 344209..345150 (-) 942 WP_086221420.1 triacylglycerol lipase -
  LO005_RS01640 - 345265..346296 (-) 1032 WP_029424123.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17630.92 Da        Isoelectric Point: 8.8351

>NTDB_id=628538 LO005_RS01605 WP_029424121.1 340924..341406(+) (pilY2) [Acinetobacter baumannii strain OC068]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIVIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTRGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=628538 LO005_RS01605 WP_029424121.1 340924..341406(+) (pilY2) [Acinetobacter baumannii strain OC068]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGTTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCAGAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

92.5

100

0.925
  comE Acinetobacter baylyi ADP1

38.953

100

0.419