Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LO005_RS01955 Genome accession   NZ_CP087309
Coordinates   412203..412838 (-) Length   211 a.a.
NCBI ID   WP_086379712.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407203..417838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO005_RS01920 mlaE 407539..408315 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  LO005_RS01925 - 408315..408995 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  LO005_RS01930 - 409022..409663 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  LO005_RS01935 - 409675..409962 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  LO005_RS01940 - 410032..411045 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  LO005_RS01945 - 411203..411784 (+) 582 WP_031379916.1 TIGR00730 family Rossman fold protein -
  LO005_RS01950 - 411799..412200 (+) 402 WP_000849701.1 NUDIX domain-containing protein -
  LO005_RS01955 comF 412203..412838 (-) 636 WP_086379712.1 ComF family protein Machinery gene
  LO005_RS01960 recG 412831..414876 (-) 2046 WP_000204961.1 ATP-dependent DNA helicase RecG -
  LO005_RS01965 - 414897..415712 (+) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  LO005_RS01970 adeT2 415792..416778 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24555.65 Da        Isoelectric Point: 9.7140

>NTDB_id=628540 LO005_RS01955 WP_086379712.1 412203..412838(-) (comF) [Acinetobacter baumannii strain OC068]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFTKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=628540 LO005_RS01955 WP_086379712.1 412203..412838(-) (comF) [Acinetobacter baumannii strain OC068]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCGTTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTACTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAACCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981