Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LO009_RS17350 Genome accession   NZ_CP087298
Coordinates   3622832..3623572 (-) Length   246 a.a.
NCBI ID   WP_138149546.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC070     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3617832..3628572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS17330 aroB 3618413..3619495 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LO009_RS17335 aroK 3619524..3620093 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO009_RS17340 pilQ 3620105..3622231 (-) 2127 WP_138149544.1 type IV pilus secretin PilQ Machinery gene
  LO009_RS17345 pilP 3622294..3622821 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO009_RS17350 pilO 3622832..3623572 (-) 741 WP_138149546.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO009_RS17355 pilN 3623569..3624210 (-) 642 WP_000201228.1 PilN domain-containing protein Machinery gene
  LO009_RS17360 pilM 3624210..3625268 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO009_RS17365 ponA 3625430..3627985 (+) 2556 WP_138149548.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27850.55 Da        Isoelectric Point: 4.7234

>NTDB_id=628426 LO009_RS17350 WP_138149546.1 3622832..3623572(-) (pilO) [Acinetobacter baumannii strain OC070]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWVFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPTKDNKSDIPVLNYSIKAKTYRYVGTTDTSEQTGSPPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=628426 LO009_RS17350 WP_138149546.1 3622832..3623572(-) (pilO) [Acinetobacter baumannii strain OC070]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGGTTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGATTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAACTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGACAACAGATACATCGGAGCAAACGGGCAGCCCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

97.967

100

0.98
  comO Acinetobacter baylyi ADP1

68.595

98.374

0.675