Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LO009_RS17345 Genome accession   NZ_CP087298
Coordinates   3622294..3622821 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain OC070     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3617294..3627821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS17325 - 3617522..3618397 (-) 876 WP_000218801.1 hypothetical protein -
  LO009_RS17330 aroB 3618413..3619495 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LO009_RS17335 aroK 3619524..3620093 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO009_RS17340 pilQ 3620105..3622231 (-) 2127 WP_138149544.1 type IV pilus secretin PilQ Machinery gene
  LO009_RS17345 pilP 3622294..3622821 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO009_RS17350 pilO 3622832..3623572 (-) 741 WP_138149546.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO009_RS17355 pilN 3623569..3624210 (-) 642 WP_000201228.1 PilN domain-containing protein Machinery gene
  LO009_RS17360 pilM 3624210..3625268 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=628425 LO009_RS17345 WP_000695065.1 3622294..3622821(-) (pilP) [Acinetobacter baumannii strain OC070]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=628425 LO009_RS17345 WP_000695065.1 3622294..3622821(-) (pilP) [Acinetobacter baumannii strain OC070]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCTTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCCGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714