Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LO009_RS17355 Genome accession   NZ_CP087298
Coordinates   3623569..3624210 (-) Length   213 a.a.
NCBI ID   WP_000201228.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC070     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3618569..3629210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS17335 aroK 3619524..3620093 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO009_RS17340 pilQ 3620105..3622231 (-) 2127 WP_138149544.1 type IV pilus secretin PilQ Machinery gene
  LO009_RS17345 pilP 3622294..3622821 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO009_RS17350 pilO 3622832..3623572 (-) 741 WP_138149546.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO009_RS17355 pilN 3623569..3624210 (-) 642 WP_000201228.1 PilN domain-containing protein Machinery gene
  LO009_RS17360 pilM 3624210..3625268 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LO009_RS17365 ponA 3625430..3627985 (+) 2556 WP_138149548.1 penicillin-binding protein PBP1a -
  LO009_RS17370 - 3628003..3628827 (-) 825 WP_138149550.1 putative RNA methyltransferase -
  LO009_RS17375 - 3628830..3629162 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24005.32 Da        Isoelectric Point: 5.3968

>NTDB_id=628427 LO009_RS17355 WP_000201228.1 3623569..3624210(-) (pilN) [Acinetobacter baumannii strain OC070]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=628427 LO009_RS17355 WP_000201228.1 3623569..3624210(-) (pilN) [Acinetobacter baumannii strain OC070]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709