Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LO009_RS17340 Genome accession   NZ_CP087298
Coordinates   3620105..3622231 (-) Length   708 a.a.
NCBI ID   WP_138149544.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC070     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3615105..3627231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS17325 - 3617522..3618397 (-) 876 WP_000218801.1 hypothetical protein -
  LO009_RS17330 aroB 3618413..3619495 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  LO009_RS17335 aroK 3619524..3620093 (-) 570 WP_000643712.1 shikimate kinase AroK -
  LO009_RS17340 pilQ 3620105..3622231 (-) 2127 WP_138149544.1 type IV pilus secretin PilQ Machinery gene
  LO009_RS17345 pilP 3622294..3622821 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LO009_RS17350 pilO 3622832..3623572 (-) 741 WP_138149546.1 type 4a pilus biogenesis protein PilO Machinery gene
  LO009_RS17355 pilN 3623569..3624210 (-) 642 WP_000201228.1 PilN domain-containing protein Machinery gene
  LO009_RS17360 pilM 3624210..3625268 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76649.27 Da        Isoelectric Point: 8.1234

>NTDB_id=628424 LO009_RS17340 WP_138149544.1 3620105..3622231(-) (pilQ) [Acinetobacter baumannii strain OC070]
MNYVFRQFSMGAVAIAIMQAASAQVSMTNIVPMQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQGLKQSKI
SVATNEASSVDVTSDNQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTSNKPLPVVSAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTIGTKIPTHLARRLNVNDFATPVSSIDAYNDKGAGVITIQSSGSYEYMAYQAENKLTI
SLKSPPDKSVSSSYKAPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDQAKALAQTIKLAPIQTDYIRMSYAKAVDVLKLIEDSRDAKGAAANRTANSDALALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYLMTTTSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSIAGEAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTKNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=628424 LO009_RS17340 WP_138149544.1 3620105..3622231(-) (pilQ) [Acinetobacter baumannii strain OC070]
ATGAATTACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTATTGCGATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAACATTGTACCAATGCAAATTGCAGGTCAGGGCACAGAAATTAGAGTCATGTTTAATGGCTTGCCACCACAACCAC
AAGCTTACCAACTTGAAAATCCTTCACGTTTAATCCTTGATTTTGATAAGGCACAGCAAGGTTTAAAACAGTCTAAAATT
AGTGTTGCAACTAATGAGGCAAGTTCTGTAGATGTTACTTCAGATAACCAGCGCTCACGTTTAACTGTAAACCTAAAAGA
TGCTGGAGCATTTACAACACGAGTCGAAGGCAATACTTTCATTTTAAAAATTAATTCTGCTCAAACAAGTAATAAGCCGC
TACCTGTGGTCTCAGCACAACCACAGGGAGTTTCAAATATTGGCTTTCAGCGTGGTAGTCAGGGAGAAGGCCTGGTTGTT
GTAGATCTTTTAGGAAGTAATACGCCTGTAGATGTTCAGCAGCAGGGTAGTAAAGTCGTTATAAGAACAATAGGTACAAA
AATCCCGACACATTTAGCGCGTCGCTTAAATGTAAATGATTTTGCAACACCGGTTTCAAGTATCGATGCTTATAATGATA
AAGGGGCTGGTGTAATAACTATCCAGTCCTCTGGTAGCTATGAATATATGGCCTACCAGGCAGAGAATAAGCTCACGATC
AGTTTAAAAAGCCCACCAGATAAAAGTGTATCATCTTCATATAAGGCACCAAGTTATTCAGGGAATAAACTTTCCTTAGA
CTTCCAGGATATTGAAGTTCGTAGGGTTCTGCAGTTACTGGCTGATTTTACAGGCATTAATATGGTAGCTGCTGATAGTG
TACAAGGTAATATCACATTACGTTTAAAAGATGTGCCTTGGGATCAGGCCCTTGATATTATTTTAAAAACTAAAAATCTC
GATAAACGACGTAACGGCAATGTGATTTGGATTGCTCCAGTTGCTGAGTTAATTAAAGCTGAGGATGATCAGGCAAAAGC
TTTAGCGCAAACTATTAAGTTGGCACCGATACAAACAGATTATATTCGGATGAGTTATGCGAAAGCAGTTGATGTGCTTA
AGTTAATCGAAGATTCTCGTGATGCAAAAGGGGCGGCCGCAAACCGTACCGCTAATTCAGATGCTCTTGCTTTAGAGAGT
TTGCTGAGCTCTCGTGGTAGTGCGGTTGCTGACACACGTACTAATACCTTAATTGTAAATGATACGGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAGTTGCTTGATGTGCAAGTTAAACAGGTCATGGTTGAGGCACGTATTGTGAGAGCTTCTA
CGTCATTTACGAAAGAGCTTGGGGTGAAGTGGGGTATTCTTTCACAAGGTATTACCAATAATAAAAACTTATTGGTTGGC
GGGAGTGAAACAACCTTGTGGAATTTACGTGAGCCGAAGAAAGATGAAACTACGGGAGGCTATAAATATACGATTGAGCG
TCCAGATAACTTAAACGTGGATTTAGGGGTCACTAATCCCGCAGGAAGTATCGCTTTCGGCTTAATTAGTATGTCTGACT
TTATGTTGGATCTTGAATTGTCTGCTTTACAAGCCGATGGTTATGGTGAGGTTATTTCTACCCCTAAAGTCATGACTGCC
GATAAACAAACTGCGAAAGTTGCAACAGGTCAACAAGTTCCTTATCTAATGACAACCACTTCTGGTGCTGGATCTACAGC
AACGACATCATTTAAAGATGCACTCTTAAGTCTTGATGTGACCCCGAGTATTACACCTGATGGCAAAATTCAAATGAAGT
TGGATATTTCTAAGGACTCTATAGCAGGTGAAGCGCCTAATGGTGAGTTGATTCTGAATAAGAATAATATCAATACCAAT
GTATTGGTAGATAATGGCGAAACTGTCATTTTAGGTGGAGTATTTGAGCAGACAACAAAGAATTCACAAACCAAAGTTCC
TTTCTTTGGTGATATTCCTGTGGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTGCTGATTT
TCGTTACACCACGAATTGTTAATGACACTTTAGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-442)

AMIN domain (AMIN)

(39-121)

Bacterial type II and III secretion system protein (Secretin)

(542-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

89.182

100

0.908
  pilQ Acinetobacter baumannii strain A118

89.043

100

0.907
  comQ Acinetobacter baylyi ADP1

72.689

100

0.733
  pilQ Pseudomonas aeruginosa PAK

39.347

99.435

0.391