Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KXU59_RS22745 Genome accession   NZ_CP087266
Coordinates   4822117..4823631 (+) Length   504 a.a.
NCBI ID   WP_244774430.1    Uniprot ID   -
Organism   Aeromonas veronii strain HD6448     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4817117..4828631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXU59_RS22730 (LOS88_22730) - 4818854..4819798 (-) 945 WP_005357461.1 branched-chain amino acid transaminase -
  KXU59_RS22735 (LOS88_22735) ilvM 4819811..4820089 (-) 279 WP_182963050.1 acetolactate synthase 2 small subunit -
  KXU59_RS22740 (LOS88_22740) ilvG 4820086..4821732 (-) 1647 WP_244774432.1 acetolactate synthase 2 catalytic subunit -
  KXU59_RS22745 (LOS88_22745) comM 4822117..4823631 (+) 1515 WP_244774430.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KXU59_RS22750 (LOS88_22750) - 4823758..4824657 (+) 900 WP_043823224.1 acyltransferase -
  KXU59_RS22755 (LOS88_22755) - 4824664..4825629 (+) 966 WP_244774428.1 acyltransferase -
  KXU59_RS22760 (LOS88_22760) - 4825554..4826060 (-) 507 WP_244774426.1 DUF523 domain-containing protein -
  KXU59_RS22765 (LOS88_22765) - 4826164..4826814 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  KXU59_RS22770 (LOS88_22770) - 4826889..4827524 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54538.42 Da        Isoelectric Point: 7.6883

>NTDB_id=628273 KXU59_RS22745 WP_244774430.1 4822117..4823631(+) (comM) [Aeromonas veronii strain HD6448]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGAIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQSAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=628273 KXU59_RS22745 WP_244774430.1 4822117..4823631(+) (comM) [Aeromonas veronii strain HD6448]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACGGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCTCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGTGGCCGT
TTCGATCTGGCAATCGCCATCGGTATTCTTGCCGCTTCCAAGCAGATACCTGCAAAATATCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACAGGCGCAATTCGTCCCGTACTCGGGGTACTGCCTGCCGTACTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTACCGCGAGAGAACGGCCCCGAAGCCTCCCTCATCCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAACGCGGAAAGCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGTCAGTCTCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACTGGCAAGAGCATGCTGGCGAGCCGCCTTCCCGGCATCTTGCCGCCGCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGTGCCTCGGCGGTGGCGCTGGTGGGAGGCGGCAGCCACCCAAGACCCGGCGAAATATCGCTGGCCC
ACAACGGAGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGTCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGATCTGACTGTGGAAGTGCCACTGCTACCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGTCAGCAGATCCGCGATCGGGTACTGGCGGCGCGAGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTGGATAGCCGCGAGATTGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAATCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

62.948

99.603

0.627
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464