Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY68_RS30900 Genome accession   NZ_CP087205
Coordinates   6858322..6859815 (+) Length   497 a.a.
NCBI ID   WP_265041664.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-053     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6853322..6864815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY68_RS30865 (LOY68_30840) - 6853520..6854857 (-) 1338 WP_054048514.1 ammonium transporter -
  LOY68_RS30870 (LOY68_30845) glnK 6854893..6855231 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  LOY68_RS30875 (LOY68_30850) - 6855647..6855907 (+) 261 WP_054048512.1 accessory factor UbiK family protein -
  LOY68_RS30880 (LOY68_30855) - 6856359..6856880 (+) 522 WP_265041657.1 Bro-N domain-containing protein -
  LOY68_RS30885 (LOY68_30860) - 6856934..6857239 (-) 306 WP_054617025.1 HigA family addiction module antitoxin -
  LOY68_RS30890 (LOY68_30865) - 6857248..6857526 (-) 279 WP_163910680.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LOY68_RS30895 (LOY68_30870) - 6857776..6857946 (+) 171 WP_265041662.1 hypothetical protein -
  LOY68_RS30900 (LOY68_30875) comM 6858322..6859815 (+) 1494 WP_265041664.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LOY68_RS30905 (LOY68_30880) - 6859864..6860166 (+) 303 WP_054048502.1 hypothetical protein -
  LOY68_RS30910 (LOY68_30885) - 6860219..6861433 (-) 1215 WP_265041666.1 aldose 1-epimerase family protein -
  LOY68_RS30915 (LOY68_30890) - 6861698..6863674 (-) 1977 WP_265041667.1 methyl-accepting chemotaxis protein -
  LOY68_RS30920 (LOY68_30895) - 6863849..6864769 (-) 921 WP_054617030.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53036.16 Da        Isoelectric Point: 7.7003

>NTDB_id=628137 LOY68_RS30900 WP_265041664.1 6858322..6859815(+) (comM) [Pseudomonas sp. B21-053]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRILVVPRENAEEACLASGLKVIAVDHL
LQAVAHFNGHTPIEPYVSNGLLYASMPYPDLNEVQGQMSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVSSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPLPKP
GDDTTTAAALVADARERQHKRQGCANAFLDLPGLRRHCTLSTADESWLESACERLTLSLRAAHRLLKVARTLADLEQVDG
ITREHLAEALQYRPASA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=628137 LOY68_RS30900 WP_265041664.1 6858322..6859815(+) (comM) [Pseudomonas sp. B21-053]
ATGTCCCTCTCCATCGTCCATAGCCGCGCCCAGATTGGTGTAGATGCGCCCGCCGTTACCGTAGAAGTCCATCTGGCCAA
CGGTCTTCCCTCCCTGACCATGGTCGGTTTGCCGGAGGCTGCGGTGAAAGAAAGCAAGGACCGGGTACGCAGCGCGATCA
TCAATTCGGGGCTGCAATTTCCGGCGCGGCGCATCACGTTGAATCTCGCGCCTGCGGATTTGCCGAAGGACGGCGGGCGG
TTCGATCTGGCGATTGCCCTGGGGATATTGTCCGCCAGCGTGCAGGTGCCGACGTTGACCCTGGATGACGTGGAATGCCT
TGGTGAATTGGCGTTATCCGGCGCGGTTCGGGCCGTCCGCGGTGTGCTCCCCGCAGCGCTGGCAGCACGCAAGGCCGGTC
GGATACTGGTGGTGCCGCGAGAGAATGCCGAGGAGGCGTGCCTGGCGTCAGGGTTGAAGGTGATTGCAGTGGATCATTTG
CTTCAGGCGGTCGCGCACTTCAACGGACACACTCCGATCGAGCCCTACGTATCCAATGGTTTGCTGTACGCCAGCATGCC
TTATCCCGATTTGAATGAGGTACAGGGCCAAATGTCAGCCAAGCGTGCGCTGCTGATTGCGGCGGCAGGCGCGCATAACT
TGTTGTTCAGCGGACCGCCCGGGACGGGGAAAACCCTGCTGGCGAGTCGCTTGCCCGGGCTCTTGCCACCGCTGGCCGAG
AATGAGGCGCTGGAAGTAGCGGCGATTCAATCGGTCTCCAGTTGCGTGCCGCTGAGCCATTGGCCACAACGACCGTTTCG
CCAGCCCCACCACTCTGCATCCGGTCCGGCATTGGTGGGCGGTGGGTCAAAACCGCAACCTGGAGAAATCACCCTCGCCC
ACCACGGCGTGCTATTCCTTGATGAACTACCGGAGTTTGATCGAAAGGTCCTGGAAGTTTTGCGAGAGCCGATGGAGTCC
GGCCACATCGTGATATCCCGCGCCAAGGACCGCGTGCGTTTCCCGGCACGCTTCCAACTGGTCGCCGCGATGAACCCGTG
CCCCTGTGGATATCTTGGCGAACCCAGCGGCAAATGCAGTTGTACACCGGACATGGTCCAGCGCTACCGCAACAAACTCT
CCGGGCCGCTGCTGGATCGCATCGACCTGCACCTGACCGTCGCCCGGGAAGCCACAGCGTTGAATCCTTTGCCCAAACCC
GGCGACGACACAACCACCGCAGCTGCACTGGTTGCCGACGCAAGGGAGCGGCAACACAAACGCCAAGGCTGCGCCAACGC
CTTCCTTGATCTGCCAGGACTGCGTCGACACTGCACGTTATCCACAGCCGATGAAAGCTGGCTCGAATCCGCCTGCGAAC
GACTGACGTTATCGCTGCGAGCCGCTCACCGACTGCTCAAGGTCGCTCGTACCTTGGCGGATCTCGAGCAGGTCGACGGA
ATCACCCGCGAACATCTGGCAGAGGCGTTGCAATATCGCCCTGCCTCAGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.728

100

0.547
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Haemophilus influenzae Rd KW20

52.894

100

0.533
  comM Glaesserella parasuis strain SC1401

52.705

100

0.529
  comM Legionella pneumophila str. Paris

49.398

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.398

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.8

100

0.451