Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY67_RS27200 Genome accession   NZ_CP087203
Coordinates   6184971..6186464 (+) Length   497 a.a.
NCBI ID   WP_265065212.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-056     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6179971..6191464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY67_RS27175 (LOY67_27145) glnK 6180106..6180444 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  LOY67_RS27180 (LOY67_27150) - 6180859..6181119 (+) 261 WP_265065209.1 accessory factor UbiK family protein -
  LOY67_RS28715 - 6181745..6182608 (-) 864 WP_413776234.1 methyl-accepting chemotaxis protein -
  LOY67_RS28720 - 6182603..6183385 (-) 783 Protein_5379 MCP four helix bundle domain-containing protein -
  LOY67_RS27195 (LOY67_27165) - 6183493..6184773 (-) 1281 WP_265065211.1 sensor histidine kinase -
  LOY67_RS27200 (LOY67_27170) comM 6184971..6186464 (+) 1494 WP_265065212.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LOY67_RS27205 (LOY67_27175) - 6186471..6187685 (-) 1215 WP_265065213.1 aldose 1-epimerase family protein -
  LOY67_RS28725 - 6187964..6188824 (-) 861 WP_413776235.1 methyl-accepting chemotaxis protein -
  LOY67_RS28730 - 6188867..6189940 (-) 1074 Protein_5384 Cache 3/Cache 2 fusion domain-containing protein -
  LOY67_RS27215 (LOY67_27185) - 6190128..6191048 (-) 921 WP_265065215.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52858.79 Da        Isoelectric Point: 7.5084

>NTDB_id=628078 LOY67_RS27200 WP_265065212.1 6184971..6186464(+) (comM) [Pseudomonas sp. B21-056]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARQAGRTLVVPRANAEEACLASGLRVIAVDHL
LEVVAHFNGHAPVEPFVSNGLLSASKPYPDLNEVQGQVGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKSEP
GEDTATVAEQVAEARERQQARQGCANAFLDLPGLRRHCTLSPADETWLETACERLTLSLRAAHRLLKVARTLADLEQAGR
ISREHLAEALQYRPATA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=628078 LOY67_RS27200 WP_265065212.1 6184971..6186464(+) (comM) [Pseudomonas sp. B21-056]
ATGTCGCTCGCCATTGTCCATAGCCGCGCCCAGGTGGGGGTGGAGGCTCCCGCCGTTACCGTTGAGGTCCATCTGGCCAA
TGGCTTGCCGTCGCTGACGATGGTCGGTCTGCCGGAGGCGGCGGTGAAGGAAAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGAACTTCCCGGCGCGGCGCATCACCTTGAACCTGGCGCCGGCGGATCTGCCGAAAGACGGCGGGCGG
TTCGACCTGGCCATTGCCCTGGGCATCCTGGCGGCCAGCGTGCAGGTGCCGACCCTGACGCTGGACGACGTGGAATGCCT
CGGCGAGCTGGCGTTATCCGGCGCCGTGCGACCGGTACGCGGGGTATTGCCCGCGGCACTGGCAGCGCGCCAGGCCGGGC
GTACGCTGGTGGTGCCGCGGGCGAATGCCGAGGAAGCCTGCCTGGCGTCGGGCCTGAGGGTGATCGCCGTGGATCATCTG
CTCGAAGTGGTGGCGCACTTCAACGGCCACGCTCCGGTCGAGCCATTCGTTTCGAACGGACTGCTCTCGGCCAGCAAGCC
CTACCCCGACCTGAATGAAGTGCAGGGCCAGGTCGGGGCCAAGCGTGCACTGCTGATCGCTGCCGCCGGCGCGCACAACC
TGCTGTTCAGCGGCCCACCGGGTACCGGCAAGACATTGCTGGCCAGTCGTCTGCCGGGGCTGCTGCCACCACTGGCCGAG
AGCGAGGCCCTGGAGGTCGCGGCGATCCAGTCGGTTGCCAGTTGCGTGCCATTGAGTCATTGGCCGCAACGCCCTTTTCG
CCAGCCCCATCATTCGGCATCCGGTCCGGCGCTGGTCGGTGGCGGTTCCAAACCGCAGCCGGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTCCTGGATGAATTGCCGGAGTTCGACCGCAAGGTCTTGGAAGTCCTGCGCGAGCCACTGGAGTCG
GGCCACATCGTCGTCTCGCGTGCCCGCGACCGTGTACGCTTTCCGGCGCGCTTCCAGTTGGTGGCGGCGATGAACCCCTG
CCCCTGTGGATACCTTGGCGAGCCCAGCGGCCGTTGCTCCTGCACACCAGACATGGTGCAGCGCTATCGCAACAAGCTCT
CCGGCCCCCTGCTGGACCGCATCGACCTGCACCTGACGGTGGCGCGGGAAGCCACAGCGCTGAACCCCAAGAGCGAACCG
GGTGAGGACACCGCCACCGTGGCCGAACAGGTGGCCGAAGCCCGTGAACGCCAGCAGGCGCGTCAGGGCTGTGCCAACGC
TTTCCTGGATCTACCGGGTTTGCGGCGGCATTGCACGTTATCCCCAGCCGATGAAACGTGGCTGGAAACGGCCTGCGAGC
GACTGACCTTGTCGCTGCGGGCCGCCCATCGTTTGCTCAAGGTCGCCCGGACGCTGGCGGACCTTGAGCAAGCGGGCCGT
ATCAGCCGGGAGCACCTGGCTGAAGCCTTGCAGTATCGACCCGCTACGGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

99.598

0.563
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

54.108

100

0.543
  comM Glaesserella parasuis strain SC1401

53.2

100

0.535
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.627

100

0.473