Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY67_RS02045 Genome accession   NZ_CP087203
Coordinates   461070..462134 (+) Length   354 a.a.
NCBI ID   WP_265065721.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-056     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 456070..467134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY67_RS02035 (LOY67_02035) - 457041..458210 (-) 1170 WP_265064268.1 IS4 family transposase -
  LOY67_RS02040 (LOY67_02040) - 458417..460861 (-) 2445 WP_413776192.1 penicillin-binding protein 1A -
  LOY67_RS02045 (LOY67_02045) comM 461070..462134 (+) 1065 WP_265065721.1 pilus assembly protein PilM Machinery gene
  LOY67_RS02050 (LOY67_02050) - 462134..462700 (+) 567 WP_265065722.1 PilN domain-containing protein -
  LOY67_RS02055 (LOY67_02055) pilO 462697..463320 (+) 624 WP_265065723.1 type 4a pilus biogenesis protein PilO -
  LOY67_RS02060 (LOY67_02060) - 463317..463844 (+) 528 WP_265065724.1 pilus assembly protein PilP -
  LOY67_RS02065 (LOY67_02065) pilQ 463858..465930 (+) 2073 WP_265065725.1 type IV pilus secretin PilQ Machinery gene
  LOY67_RS02070 (LOY67_02070) aroK 465935..466453 (+) 519 WP_265065726.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38216.81 Da        Isoelectric Point: 4.9112

>NTDB_id=628053 LOY67_RS02045 WP_265065721.1 461070..462134(+) (comM) [Pseudomonas sp. B21-056]
MLRLFNKKAHTLLGIDISSTSVKLLELSRQGDRYRVESYAVEPLPANAVIEKNIAELEGVGQALSRLLVKARTPSRNVAV
AVAGSAVITKTIEMDAGMSDDEMENQLKIEADQYIPYPLDEVAIDFEVLGVSPRSSERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERAFGLLATQLAASQERLTVAVIDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTL
EQAGLAKKQGGLPDDYLSEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGTASVAGLDRLIEQRLGTPTQVANP
FSNMALGSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=628053 LOY67_RS02045 WP_265065721.1 461070..462134(+) (comM) [Pseudomonas sp. B21-056]
GTGCTACGACTCTTCAATAAAAAGGCCCATACGCTTCTGGGCATCGACATCAGCTCCACGTCGGTGAAGCTGCTCGAATT
GAGCCGCCAGGGTGACCGTTACCGGGTCGAGTCCTACGCGGTCGAACCGTTGCCGGCCAACGCCGTGATCGAGAAGAACA
TCGCCGAGCTCGAGGGGGTCGGACAGGCGCTGTCCCGGCTACTGGTCAAGGCCAGGACGCCCTCGCGCAACGTGGCGGTA
GCCGTGGCGGGTTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGGATGTCCGACGATGAGATGGAGAACCAGCT
CAAGATCGAGGCGGATCAGTACATTCCTTATCCACTGGATGAAGTGGCCATCGATTTCGAGGTCCTGGGTGTGTCGCCGC
GCAGCAGCGAGCGGGTCGAGGTGCTGTTGGCAGCCTGTCGCAAGGAAAACGTCGAGGTGCGCGAGGCTGCGCTGGCGCTG
GCGGGGCTGACGGCACGGGTGGTCGATGTGGAAGCCTACGCGCTGGAACGTGCCTTCGGCCTGCTCGCCACGCAACTGGC
CGCGTCCCAGGAGCGGCTGACCGTTGCGGTGATCGACATCGGCGCCACCATGACCACCCTCAGCGTGCTGCACAACGGCC
GCATCATCTATACCCGCGAGCAATTGTTTGGCGGTCGCCAGCTCACCGAGGAAATCCAGCGGCGCTACGGCCTGACCCTC
GAACAGGCCGGCCTGGCAAAGAAGCAGGGCGGCTTGCCGGACGATTACCTCAGCGAGGTGCTGCAACCGTTTCGCGAGGC
CTTGGTGCAGCAGGTTTCGCGGTCCCTGCAGTTTTTCTTCGCTTCGGGGCAGTACAGCGCGGTGGACCATATCCTGTTGG
CCGGGGGCACGGCGTCGGTCGCCGGGCTGGACCGGCTGATCGAACAGCGCCTGGGCACGCCGACCCAGGTGGCCAACCCG
TTTTCCAACATGGCCCTGGGCAGCAAGGTCAATGCCGGTGCCCTGGCCAGTGATGCGCCGGCGCTGATGATCGCCTGTGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.78

100

0.568
  pilM Acinetobacter baumannii D1279779

56.497

100

0.565
  comM Acinetobacter baylyi ADP1

54.802

100

0.548
  pilM Legionella pneumophila strain ERS1305867

49.153

100

0.492