Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY63_RS27485 Genome accession   NZ_CP087202
Coordinates   6204499..6205992 (+) Length   497 a.a.
NCBI ID   WP_265084958.1    Uniprot ID   -
Organism   Pseudomonas asplenii strain B21-058     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 6178349..6206857 6204499..6205992 within 0


Gene organization within MGE regions


Location: 6178349..6206857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY63_RS27375 (LOY63_27335) - 6178349..6179359 (-) 1011 WP_010445664.1 AraC family transcriptional regulator -
  LOY63_RS27380 (LOY63_27340) - 6179367..6180389 (-) 1023 WP_265084944.1 AraC family transcriptional regulator -
  LOY63_RS27385 (LOY63_27345) - 6180736..6181545 (+) 810 WP_029531350.1 EAL domain-containing protein -
  LOY63_RS27390 (LOY63_27350) - 6181632..6183242 (+) 1611 WP_010445668.1 methyl-accepting chemotaxis protein -
  LOY63_RS28890 - 6183486..6184370 (-) 885 WP_397459822.1 methyl-accepting chemotaxis protein -
  LOY63_RS28895 - 6184389..6185159 (-) 771 Protein_5416 cache domain-containing protein -
  LOY63_RS27400 (LOY63_27360) - 6185569..6186450 (+) 882 WP_265084946.1 LysR family transcriptional regulator -
  LOY63_RS27405 (LOY63_27365) - 6186505..6187398 (-) 894 WP_265084947.1 hypothetical protein -
  LOY63_RS27410 (LOY63_27370) - 6187398..6188315 (-) 918 WP_265084948.1 DMT family transporter -
  LOY63_RS27415 (LOY63_27375) - 6188326..6189666 (-) 1341 WP_232000482.1 hypothetical protein -
  LOY63_RS27420 (LOY63_27380) - 6190044..6190889 (+) 846 Protein_5421 YifB family Mg chelatase-like AAA ATPase -
  LOY63_RS27425 (LOY63_27385) - 6191323..6193038 (-) 1716 WP_265084949.1 hypothetical protein -
  LOY63_RS27430 (LOY63_27390) - 6193552..6193983 (-) 432 WP_265084950.1 hypothetical protein -
  LOY63_RS27435 (LOY63_27395) - 6193983..6194828 (-) 846 WP_265084951.1 GAF domain-containing protein -
  LOY63_RS27440 (LOY63_27400) - 6195238..6197427 (-) 2190 WP_320110161.1 S8 family peptidase -
  LOY63_RS27445 (LOY63_27405) - 6197751..6198740 (-) 990 WP_265084952.1 AAA family ATPase -
  LOY63_RS27450 (LOY63_27410) - 6198826..6199425 (-) 600 WP_320110162.1 DUF6088 family protein -
  LOY63_RS27455 (LOY63_27415) - 6200059..6200262 (+) 204 WP_265084953.1 hypothetical protein -
  LOY63_RS27460 (LOY63_27420) - 6200276..6200704 (+) 429 WP_265084954.1 hypothetical protein -
  LOY63_RS27465 (LOY63_27425) - 6200716..6201966 (+) 1251 WP_010445541.1 IS256 family transposase -
  LOY63_RS27470 (LOY63_27430) - 6202473..6202889 (+) 417 WP_265084955.1 hypothetical protein -
  LOY63_RS27475 (LOY63_27435) - 6203282..6203812 (+) 531 WP_265084956.1 Bro-N domain-containing protein -
  LOY63_RS27480 (LOY63_27440) - 6204046..6204312 (-) 267 WP_265084957.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  LOY63_RS27485 (LOY63_27445) comM 6204499..6205992 (+) 1494 WP_265084958.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LOY63_RS27490 (LOY63_27450) - 6206015..6206857 (-) 843 WP_265084959.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53268.30 Da        Isoelectric Point: 7.7022

>NTDB_id=628049 LOY63_RS27485 WP_265084958.1 6204499..6205992(+) (comM) [Pseudomonas asplenii strain B21-058]
MSLAIVHSRAQVGVEAPAVTVETHLANGLPSLTLVGLPETAVKESKDRVRSAILNSALEFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLALDNMECLGELALSGAIRSVQGVLPAALAARAAGRTLVVPLANAEEASLACGLTVIAVDHL
LQLVAHLNGNTPIKPFESSGLLHVGKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVASHVPLTRWPQRPFRQPHHSASGPALVGGGSRPRPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGDPTNRCRCTPEQIQRYRNKLSGPLLDRVDLHLTVAREATALSPVKEP
GNTTAEAAERVAQARQCQQQRQGCANAFLDLEGLRQHCKLSTADENWLETACERLTLSLRAAHRLLKVARTLADLEQVET
ISREHLAEALQYRPSTT

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=628049 LOY63_RS27485 WP_265084958.1 6204499..6205992(+) (comM) [Pseudomonas asplenii strain B21-058]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTCGGTGTGGAAGCCCCTGCCGTCACCGTCGAAACCCATCTCGCCAA
TGGCCTGCCGAGCCTGACCCTGGTCGGGTTGCCGGAAACCGCCGTGAAGGAAAGCAAGGACCGGGTGCGCAGTGCGATCC
TCAATTCGGCCCTGGAGTTTCCCGCCCGGCGCATCACGCTGAATCTGGCTCCGGCGGACTTGCCCAAGGACGGTGGCCGC
TTCGACCTCGCCATCGCCCTGGGTATTCTCGCCGCCAGTGTGCAGGTGCCGACGCTGGCGCTGGACAACATGGAATGTCT
GGGTGAACTGGCTCTCTCCGGTGCCATTCGTTCGGTGCAAGGAGTGTTGCCGGCAGCGCTGGCTGCACGGGCGGCCGGGC
GTACGCTGGTGGTGCCGCTGGCCAATGCCGAGGAGGCCTCACTGGCCTGTGGATTGACAGTGATTGCGGTCGATCACCTG
CTGCAACTGGTCGCTCATCTCAACGGTAACACGCCGATCAAACCCTTCGAGTCCAGCGGACTGCTGCATGTGGGCAAGCC
CTACCCGGACCTGAGCGAAGTACAGGGCCAACTCGCCGCCAAGCGTGCCTTGTTGATCGCCGCCGCGGGTGCCCACAATC
TGTTGTTCAGTGGCCCGCCCGGGACGGGCAAGACCCTGTTGGCCAGCCGACTACCCGGGCTGTTGCCACCGCTGGACGAA
CATGAGGCGTTGGAAGTGGCGGCGATCCAGTCGGTCGCCAGTCATGTGCCATTGACCCGTTGGCCACAGCGGCCGTTTCG
CCAACCTCACCATTCCGCATCCGGACCGGCGCTGGTGGGTGGAGGATCGAGGCCGCGTCCTGGCGAGATTACCCTCGCCC
ACCATGGTGTGCTGTTTCTCGATGAGCTGCCGGAGTTTGATCGCAAGGTGCTGGAAGTGTTGCGCGAGCCGCTGGAGTCG
GGTCATATCGTGATTTCACGGGCCCGCGACCGGGTGCGTTTTCCGGCACGTTTCCAACTGGTGGCGGCGATGAATCCGTG
TCCCTGTGGATATCTTGGCGACCCGACCAACCGCTGCCGTTGTACACCGGAGCAGATCCAGCGCTATCGCAACAAGCTGT
CCGGCCCGTTGCTGGACCGTGTCGACCTGCACCTGACCGTCGCCCGCGAGGCCACCGCACTGAGCCCGGTCAAGGAGCCG
GGAAACACCACGGCCGAGGCCGCCGAGCGGGTTGCGCAAGCCCGTCAGTGCCAGCAGCAACGCCAGGGGTGTGCCAATGC
CTTTCTCGACCTGGAAGGTTTACGTCAGCACTGCAAGTTATCCACAGCCGATGAAAACTGGCTGGAAACTGCCTGTGAGC
GCCTGACCCTGTCGCTGCGGGCGGCGCATCGATTGCTGAAGGTGGCGCGGACGTTGGCGGATCTTGAGCAGGTCGAGACA
ATCAGCCGTGAGCACTTGGCCGAAGCGTTGCAATATCGGCCCAGTACCACTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.172

99.598

0.569
  comM Vibrio cholerae strain A1552

56.364

99.598

0.561
  comM Haemophilus influenzae Rd KW20

54.509

100

0.547
  comM Glaesserella parasuis strain SC1401

54

100

0.543
  comM Legionella pneumophila str. Paris

50.202

99.799

0.501
  comM Legionella pneumophila strain ERS1305867

50.202

99.799

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.437

100

0.461