Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY36_RS27700 Genome accession   NZ_CP087193
Coordinates   6135233..6136726 (+) Length   497 a.a.
NCBI ID   WP_258671608.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-019     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6130233..6141726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY36_RS27670 (LOY36_27630) sutA 6130941..6131264 (-) 324 WP_018927530.1 transcriptional regulator SutA -
  LOY36_RS27675 (LOY36_27635) - 6131367..6131792 (-) 426 WP_007941276.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LOY36_RS27680 (LOY36_27640) - 6132006..6133343 (-) 1338 WP_018927528.1 ammonium transporter -
  LOY36_RS27685 (LOY36_27645) glnK 6133379..6133717 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  LOY36_RS27690 (LOY36_27650) - 6134134..6134394 (+) 261 WP_258671606.1 accessory factor UbiK family protein -
  LOY36_RS27695 (LOY36_27655) - 6134628..6134891 (-) 264 WP_018927527.1 HigA family addiction module antitoxin -
  LOY36_RS27700 (LOY36_27660) comM 6135233..6136726 (+) 1494 WP_258671608.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LOY36_RS27705 (LOY36_27665) - 6136733..6137947 (-) 1215 WP_028939141.1 aldose 1-epimerase family protein -
  LOY36_RS27710 (LOY36_27670) - 6138130..6140106 (-) 1977 WP_258671609.1 methyl-accepting chemotaxis protein -
  LOY36_RS27715 (LOY36_27675) - 6140291..6141211 (-) 921 WP_019580487.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52964.09 Da        Isoelectric Point: 8.2038

>NTDB_id=627804 LOY36_RS27700 WP_258671608.1 6135233..6136726(+) (comM) [Pseudomonas sp. B21-019]
MSLSIVHSRAQVGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLKVIAVDHL
LQAVAHFNGHTPIEPYASNGLLYASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLVE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPASKP
GDDTATSAALVADARERQQKRQGCANAFLDLPGLRKHCKLSTVDETWLETACERLTLSLRAAHRLLKVSRTLADLEQVDG
ITREHLAEALQYRPTTL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=627804 LOY36_RS27700 WP_258671608.1 6135233..6136726(+) (comM) [Pseudomonas sp. B21-019]
ATGTCCCTATCCATCGTCCACAGCCGCGCCCAAGTCGGCGTGGATGCGCCCGCCGTCACCGTCGAAGTGCATCTGGCTAA
CGGCTTGCCGTCGCTGACCATGGTCGGGCTGCCCGAGGCGGCGGTGAAGGAAAGCAAGGACCGGGTACGCAGCGCGATCA
TCAATTCCGGCCTGCAATTTCCGGCACGGCGCATCACCTTGAATCTCGCCCCTGCCGATTTGCCGAAGGATGGCGGGCGA
TTCGATCTGGCGATTGCCTTGGGGATTCTGTCGGCCAGCGTGCAGGTGCCGACGTTGACGCTGGATGACGTGGAGTGCCT
GGGAGAGCTGGCGCTGTCAGGCGCAGTGCGTGCGGTTCGCGGGGTGTTGCCGGCTGCGCTGGCGGCGCGCAAGGCCGGGC
GCACGCTGGTAGTCCCACGAGCGAATGCCGAAGAGGCGTGCCTGGCTTCGGGGTTGAAGGTGATTGCGGTGGATCATCTG
CTTCAAGCGGTCGCGCATTTCAATGGTCACACGCCCATCGAACCCTACGCTTCCAACGGTTTGCTCTACGCCAGCAAACC
CTATCCCGACTTGAATGAAGTTCAGGGACAACTTGCGGCCAAGCGAGCCTTGCTGATTGCGGCGGCGGGGGCTCATAACC
TGTTGTTCAGCGGGCCGCCGGGGACGGGAAAAACGTTGTTGGCGAGTCGTCTGCCGGGGCTGTTACCGCCATTGGTCGAG
AGCGAAGCACTGGAAGTCGCGGCGATTCAATCGGTCGCCAGTTGTGTGCCGTTGAGTCATTGGCCACAGCGCCCCTTCCG
ACAGCCCCACCACTCCGCCTCAGGCCCTGCACTGGTAGGCGGCGGCTCGAAACCGCAACCCGGCGAAATCACCCTCGCCC
ACCATGGCGTGTTGTTCCTCGATGAGCTTCCAGAGTTTGATCGCAAGGTATTGGAGGTGTTGAGAGAGCCATTGGAATCC
GGCCACATCGTGATTTCCCGCGCCAAGGACCGCGTACGCTTTCCGGCGCGCTTTCAACTGGTCGCCGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGAGCCAAGTGGCCGTTGCTCCTGTACGCCGGACATGGTGCAGCGCTATCGCAACAAGCTGT
CGGGGCCACTGCTGGACCGCATCGATCTGCACCTGACGGTTGCTCGGGAGGCTACGGCGCTGAACCCAGCGTCGAAGCCC
GGCGACGACACCGCGACCTCGGCCGCGCTGGTCGCCGATGCACGGGAGCGGCAACAGAAACGCCAGGGCTGCGCCAATGC
TTTTCTCGATTTACCGGGCCTGCGCAAGCACTGCAAGTTATCCACAGTTGACGAAACCTGGCTGGAAACGGCGTGTGAGC
GACTGACTTTGTCCCTTCGTGCGGCCCATCGACTGCTCAAGGTCTCTCGCACTCTGGCAGACCTTGAACAAGTCGATGGC
ATCACCCGTGAACACCTGGCCGAAGCGCTGCAATATCGGCCAACAACACTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.949

99.598

0.547
  comM Vibrio cholerae strain A1552

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.507

100

0.537
  comM Glaesserella parasuis strain SC1401

53.2

100

0.535
  comM Legionella pneumophila str. Paris

49.798

99.799

0.497
  comM Legionella pneumophila strain ERS1305867

49.798

99.799

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46

100

0.463