Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY36_RS01935 Genome accession   NZ_CP087193
Coordinates   431481..432545 (+) Length   354 a.a.
NCBI ID   WP_019581855.1    Uniprot ID   A0AB33EI66
Organism   Pseudomonas sp. B21-019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426481..437545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY36_RS01925 (LOY36_01925) - 427425..428693 (+) 1269 WP_204123936.1 malic enzyme-like NAD(P)-binding protein -
  LOY36_RS01930 (LOY36_01930) - 428826..431264 (-) 2439 WP_408981114.1 penicillin-binding protein 1A -
  LOY36_RS01935 (LOY36_01935) comM 431481..432545 (+) 1065 WP_019581855.1 pilus assembly protein PilM Machinery gene
  LOY36_RS01940 (LOY36_01940) - 432545..433111 (+) 567 WP_019650784.1 PilN domain-containing protein -
  LOY36_RS01945 (LOY36_01945) pilO 433108..433731 (+) 624 WP_019581857.1 type 4a pilus biogenesis protein PilO -
  LOY36_RS01950 (LOY36_01950) - 433728..434255 (+) 528 WP_258672094.1 pilus assembly protein PilP -
  LOY36_RS01955 (LOY36_01955) pilQ 434269..436344 (+) 2076 WP_258672095.1 type IV pilus secretin PilQ Machinery gene
  LOY36_RS01960 (LOY36_01960) aroK 436349..436867 (+) 519 WP_019581860.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38096.46 Da        Isoelectric Point: 4.6675

>NTDB_id=627779 LOY36_RS01935 WP_019581855.1 431481..432545(+) (comM) [Pseudomonas sp. B21-019]
MLGLFNKKTNALLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPASAVVEKNIAELEGVGQALARVLLKAKTSQRNVAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQGASVRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQEHLTVAVVDIGATMTTLSVLNNGRIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYVSEVLQPFRDALVQQVSRSLQFFFASGQYSSVDHILLAGGTASVPGLDRLIEQRLGTPTQVANP
FSDMTLSSRVNASALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=627779 LOY36_RS01935 WP_019581855.1 431481..432545(+) (comM) [Pseudomonas sp. B21-019]
GTGCTAGGACTCTTCAATAAAAAAACCAATGCGCTTCTGGGGATCGACATCAGCTCTACGTCGGTGAAGCTGTTGGAGTT
AAGCCGCCAAGGCGACCGTTATCGGGTCGAGGCCTATGCGGTCGAGCCGCTGCCCGCCAGTGCCGTGGTCGAAAAAAATA
TTGCCGAGCTCGAAGGCGTGGGGCAGGCCCTTGCGCGCGTGCTGCTCAAGGCCAAAACCAGCCAGAGGAACGTCGCCGTG
GCGGTCGCCGGCTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGTCTTTCCGACGACGAGATGGAAAACCAGCT
GAAGATCGAGGCCGATCAGTACATCCCGTATCCGCTGGATGAAGTGGCGATCGACTTCGAAGTGCAAGGCGCGTCGGTGC
GCAACCCCGAGCGGGTCAATGTGCTGCTGGCCGCCTGTCGCAAGGAAAACGTCGAGGTTCGTGAAGCGGCCCTGGCCCTG
GCCGGGCTGACCGCGCGAGTGGTCGATGTCGAAGCCTATGCCCTGGAGCGATCGTTCGGCCTGCTGGCAACCCAGCTGGC
CGCTTCTCAGGAGCATCTGACCGTGGCGGTGGTCGATATCGGCGCCACCATGACCACCCTGAGCGTGTTGAACAATGGGC
GGATCATCTACACCCGCGAACAATTGTTCGGCGGCCGACAACTGACGGAAGAAATCCAGCGCCGTTATGGCCTGACGGTC
GAGCAGGCAGGGTTGGCGAAGAAACAGGGCGGTTTGCCGGACGATTACGTCAGTGAGGTCTTGCAGCCGTTTCGGGATGC
GTTGGTGCAACAAGTATCGCGCTCATTGCAGTTTTTCTTTGCCTCCGGCCAGTACAGCTCGGTCGATCACATTCTCCTGG
CCGGCGGCACTGCCTCGGTCCCAGGGCTGGACCGGTTGATCGAGCAGCGTCTGGGGACGCCGACCCAGGTCGCCAATCCA
TTCTCTGACATGACCCTGAGCAGCAGGGTCAACGCCAGTGCCCTGGCGAGCGATGCGCCGGCACTGATGATCGCCTGCGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.78

100

0.568
  pilM Acinetobacter baumannii D1279779

56.497

100

0.565
  comM Acinetobacter baylyi ADP1

54.237

100

0.542
  pilM Legionella pneumophila strain ERS1305867

48.588

100

0.486