Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LOY36_RS01955 Genome accession   NZ_CP087193
Coordinates   434269..436344 (+) Length   691 a.a.
NCBI ID   WP_258672095.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429269..441344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY36_RS01935 (LOY36_01935) comM 431481..432545 (+) 1065 WP_019581855.1 pilus assembly protein PilM Machinery gene
  LOY36_RS01940 (LOY36_01940) - 432545..433111 (+) 567 WP_019650784.1 PilN domain-containing protein -
  LOY36_RS01945 (LOY36_01945) pilO 433108..433731 (+) 624 WP_019581857.1 type 4a pilus biogenesis protein PilO -
  LOY36_RS01950 (LOY36_01950) - 433728..434255 (+) 528 WP_258672094.1 pilus assembly protein PilP -
  LOY36_RS01955 (LOY36_01955) pilQ 434269..436344 (+) 2076 WP_258672095.1 type IV pilus secretin PilQ Machinery gene
  LOY36_RS01960 (LOY36_01960) aroK 436349..436867 (+) 519 WP_019581860.1 shikimate kinase AroK -
  LOY36_RS01965 (LOY36_01965) aroB 437018..438118 (+) 1101 WP_019581861.1 3-dehydroquinate synthase -
  LOY36_RS01970 (LOY36_01970) - 438129..439742 (+) 1614 WP_019650780.1 AAA family ATPase -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 74761.92 Da        Isoelectric Point: 5.7805

>NTDB_id=627780 LOY36_RS01955 WP_258672095.1 434269..436344(+) (pilQ) [Pseudomonas sp. B21-019]
MNRIFSTFGISLWIAFLSPLVQAANLKALDVAALPGDRVELKLSFDGPPPQPHGYTTEQPARIALDLPGVTSQLASKSRD
LGSGNARSATVVEAKDRTRLIIGLTQLTPYNARVEGNNLFVVVGQAAGNKASKPIASAPRAATAVPAPARASAPVGKAIR
GVDFQRGTQGEGNVVIDLSDPSIAPDIQERDGKIIVGFTKTQLPERLRVRLDVKDFATPVQFVNASATGDRAIISIEPSG
AFDYSTYQTDNKLTVSIRPMTVDDLQKRNAERFAYSGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEA
KVDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSVQKGNWNGSGVNG
SSTTVGTPGSTSTNSPFVDLGTSSNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQ
EASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSNT
QSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=627780 LOY36_RS01955 WP_258672095.1 434269..436344(+) (pilQ) [Pseudomonas sp. B21-019]
ATGAACAGGATTTTCTCAACCTTCGGTATTTCGCTATGGATAGCGTTTCTGTCGCCGTTGGTACAGGCGGCCAACCTCAA
AGCGCTGGATGTCGCCGCGCTGCCTGGTGACCGTGTCGAGCTGAAGTTGTCGTTCGACGGGCCGCCACCGCAGCCGCATG
GCTATACGACGGAGCAGCCTGCGCGGATTGCGCTGGACCTGCCGGGCGTTACCAGCCAACTGGCGAGCAAGAGTCGAGAC
CTGGGCAGCGGCAATGCCCGCAGCGCCACGGTGGTGGAAGCCAAGGACCGCACACGGCTGATCATCGGTCTGACTCAGCT
GACTCCGTATAACGCACGCGTCGAAGGCAACAACCTGTTTGTGGTTGTCGGGCAGGCGGCCGGTAACAAGGCGTCCAAAC
CGATTGCCAGCGCACCACGCGCGGCCACGGCGGTACCCGCGCCCGCCAGAGCCAGTGCTCCCGTGGGCAAGGCTATTCGT
GGCGTGGATTTCCAGCGTGGCACCCAGGGTGAAGGCAACGTGGTTATCGATCTGTCGGATCCGTCCATCGCCCCGGACAT
TCAGGAACGCGATGGCAAGATCATCGTCGGCTTCACCAAAACCCAATTGCCTGAGCGGTTGCGCGTCCGTCTCGACGTCA
AGGATTTCGCTACCCCGGTGCAGTTCGTCAACGCCAGCGCCACGGGCGACCGGGCCATCATCAGTATCGAGCCCAGCGGC
GCCTTCGATTATTCGACCTACCAGACCGATAACAAACTGACCGTCAGCATCCGGCCGATGACGGTCGATGACTTGCAAAA
ACGCAACGCCGAACGTTTTGCCTACAGCGGCGAAAAGCTCTCGCTAAATTTCCAGGACATCGATGTGCGCTCGGTGCTGC
AACTGATCGCCGATTTCACCAACCTCAATCTGGTGGCCAGTGACACGGTGCAGGGCGGCATCACGTTGCGCCTGCAGAAT
GTGCCGTGGGATCAGGCGCTGGACCTGGTGTTGAAAACCAAAGGCCTGGATAAGCGCAAGATTGGCAATGTGTTGCTGGT
AGCGCCGGCCGATGAAATCGCCGCCCGGGAGCGTCAGGAACTGGAGTCGCAGAAACAAATCGCCGAACTGGCGCCTCTGC
GTCGCGAACTGTTGCAGGTCAACTACGCCAAGGCCGCGGATATCGCCAAACTGTTCCAGTCGGTGACCAGCGCCGAGGCG
AAAGTCGACGAGCGCGGTTCAATCACTGTCGATGAGCGGACCAACAACATCATTGCCTACCAGACCCAGGACCGCCTCGA
CGAACTGCGTCGCATCGTTGCACAGCTGGATATTCCGGTGCGTCAGGTGATGATCGAGGCGCGCATCGTTGAGGCCAACG
TCGATTACGACAAAAGCCTCGGCGTGCGCTGGGGCGGTTCGGTGCAGAAGGGTAATTGGAACGGCTCCGGGGTCAACGGC
TCTTCGACCACCGTCGGCACGCCGGGCAGCACCAGCACCAACTCGCCGTTCGTCGACCTTGGGACTTCCTCCAACACCTC
GGGGATCGGCATCGCTTTCATTACCGACAATGTGCTGCTGGATCTTGAGCTGACGGCCATGGAGAAAACCGGCAACGGGG
AAATCGTCTCGCAGCCCAAGGTGGTCACGTCTGACAAGGAAACCGCGAAAATCCTCAAGGGCACCGAAATCCCCTATCAG
GAAGCCAGCTCCAGCGGTGCCACTTCAGTGTCGTTCAAGGAAGCCTCGCTGTCCCTGGAAGTGACGCCGCAGATCACCCC
GGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAAGTGCAGGATGTACCGCCGA
TCAAGAAAAACGAGGTCAACGCCAAGGTATTGGTCAACGACGGCGAGACCATCGTGATTGGTGGGGTTTTCTCAAATACT
CAGAGCAAGGTTGTAGATAAGGTGCCATTTCTCGGTGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGACGTGGTTTC
GGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAACAATCAGGCGATTGCTGTGAGTCATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(526-682)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)

AMIN domain (AMIN)

(37-121)

Secretin and TonB N terminus short domain (STN)

(303-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.969

100

0.754
  comQ Acinetobacter baylyi ADP1

41.403

100

0.436
  pilQ Acinetobacter baumannii strain A118

39.177

100

0.427
  pilQ Acinetobacter baumannii D1279779

39.177

100

0.427
  pilQ Legionella pneumophila strain Lp02

37.814

97.974

0.37
  pilQ Legionella pneumophila strain ERS1305867

37.814

97.974

0.37