Detailed information NTG0627775

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: LOY31_RS28310
• Genome accession: NZ_CP087192
• Coordinates: 6255082..6256575 (+)
• Length: 497 a.a.
• NCBI ID: WP_085612066.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-021
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	6253319..6262294	6255082..6256575	within	0

Gene organization within MGE regions

Location: 6253319..6262294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY31_RS28300 (LOY31_28280)	-	6253319..6253579 (+)	261	WP_007920416.1	accessory factor UbiK family protein	-
LOY31_RS28305 (LOY31_28285)	-	6254339..6254593 (-)	255	WP_085606077.1	HigA family addiction module antitoxin	-
LOY31_RS28310 (LOY31_28290)	comM	6255082..6256575 (+)	1494	WP_085612066.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
LOY31_RS28315 (LOY31_28295)	-	6256681..6258657 (-)	1977	WP_258712607.1	methyl-accepting chemotaxis protein	-
LOY31_RS28320 (LOY31_28300)	-	6258841..6259761 (-)	921	WP_127800610.1	LysR substrate-binding domain-containing protein	-
LOY31_RS28325 (LOY31_28305)	-	6259919..6261313 (+)	1395	WP_258712608.1	NorM family multidrug efflux MATE transporter	-
LOY31_RS28330 (LOY31_28310)	-	6261332..6262294 (-)	963	WP_064378582.1	IS110 family transposase	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 52854.02 Da
• Isoelectric Point: 8.2051

>NTDB_id=627775 LOY31_RS28310 WP_085612066.1 6255082..6256575(+) (comM) [Pseudomonas sp. B21-021]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLRVIAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAAKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GCIVIARAKERVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAATLVAEARERQQKRQGCANAFLDLPGLKKHCKLSTADETWLETACERLTLSLRSAHRLLKVARTLADLEKRAD
ISREHLAEALQYRPATQ

Nucleotide

• Length: 1494 bp

>NTDB_id=627775 LOY31_RS28310 WP_085612066.1 6255082..6256575(+) (comM) [Pseudomonas sp. B21-021]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATAGGCGTGGATGCTCCCGCCGTCACCGTCGAAGTTCACCTGGCCAA
CGGTTTGCCCTCGCTGACCATGGTCGGCTTGCCCGAAGCGGCGGTGAAGGAGAGCAAGGACCGCGTGCGCAGTGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACGTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCGACGTTGACGCTGGATGACGTGGAGTGCCT
TGGCGAACTGGCGTTGTCCGGCGCCGTGCGGGCGGTGCGCGGGGTGTTGCCGGCGGCACTGGCAGCGCGCAAGGCCGGGC
GGACGCTGGTGGTGCCGCGGGCGAATGCCGAGGAGGCTTGTCTGGCTTCAGGACTCAGGGTGATCGCGGTGGATCATCTG
CTGGAGGCCGTGGCGCATTTCAATGGGCATACACCGGTCGAGCCTTATGTCTCGGACGGGCTGATCCATGCCGCGAAACC
CTATCCCGACCTGAATGAAGTCCAAGGCCAACTGGCGGCCAAACGGGCGCTGCTGATTGCCGCCGCCGGTGCCCACAACC
TACTGTTCAGCGGGCCACCGGGAACGGGCAAGACGTTGCTGGCCAGTCGATTACCGGGGTTGCTGCCGCCGCTGGCCGAG
AGTGAAGCGCTGGAAGTGGCGGCGATTCAATCCGTCGCCAGCGGCGCGCCGTTGACCCATTGGCCGCAGCGCCCGTTTCG
CCAGCCGCATCACTCGGCCTCTGGCCCGGCACTGGTCGGTGGCAGCTCAAAACCTCAACCCGGCGAAATCACCCTCGCCC
ACCACGGTGTGCTGTTTCTCGATGAGCTGCCCGAGTTTGATCGCAAGGTGCTCGAGGTGCTGCGCGAACCGCTGGAATCC
GGCTGCATCGTGATCGCCCGTGCCAAGGAACGGGTGCGATTTCCCGCAAGATTCCAGTTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGATATCTTGGCGAACCGAGCGGCAAGTGCTCATGCACGCCGGACATGGTGCAGCGCTATCGCAACAAACTGT
CGGGGCCGTTGCTGGACCGGATCGATTTGCACCTGACGGTGGCGCGGGAGGCGACAGCGCTGAACCCTGCGGTAAAACCG
GGAGAGGACAGCGCCAGCGCGGCCACATTGGTCGCAGAGGCCCGCGAGCGTCAGCAAAAACGCCAGGGCTGCGCCAATGC
GTTTCTCGATTTGCCGGGGCTGAAGAAGCACTGCAAGTTATCCACAGCCGATGAAACCTGGCTGGAGACGGCGTGCGAAA
GACTGACCTTGTCGCTGCGCTCGGCGCATCGGCTGCTCAAGGTCGCGCGGACGTTGGCGGATCTGGAGAAGCGCGCGGAT
ATCAGTCGCGAACATCTGGCCGAAGCTTTGCAGTATCGGCCGGCGACTCAGTAA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (401-493)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	54.949	99.598	0.547
comM	Vibrio campbellii strain DS40M4	54.545	99.598	0.543
comM	Glaesserella parasuis strain SC1401	53	100	0.533
comM	Haemophilus influenzae Rd KW20	53.106	100	0.533
comM	Legionella pneumophila str. Paris	50	100	0.503
comM	Legionella pneumophila strain ERS1305867	50	100	0.503
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.418	100	0.459