Detailed information NTG0627537

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: LOY24_RS27765
• Genome accession: NZ_CP087183
• Coordinates: 6197293..6198783 (+)
• Length: 496 a.a.
• NCBI ID: WP_258654355.1
• Uniprot ID: -
• Organism: Pseudomonas putida strain B21-029
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6192293..6203783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY24_RS27740 (LOY24_27715)	glnK	6193222..6193560 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
LOY24_RS27745 (LOY24_27720)	-	6193922..6194188 (+)	267	WP_258654351.1	accessory factor UbiK family protein	-
LOY24_RS27750 (LOY24_27725)	-	6194189..6194542 (+)	354	WP_258654352.1	gamma-glutamylcyclotransferase family protein	-
LOY24_RS27755 (LOY24_27730)	-	6194580..6195008 (+)	429	WP_258654353.1	molybdopterin-binding protein	-
LOY24_RS27760 (LOY24_27735)	-	6195014..6197032 (-)	2019	WP_258654354.1	DUF4034 domain-containing protein	-
LOY24_RS27765 (LOY24_27740)	comM	6197293..6198783 (+)	1491	WP_258654355.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
LOY24_RS27770 (LOY24_27745)	-	6198983..6200770 (+)	1788	WP_258654356.1	monovalent cation:proton antiporter-2 (CPA2) family protein	-
LOY24_RS27775 (LOY24_27750)	-	6201460..6201753 (+)	294	WP_019473574.1	hypothetical protein	-
LOY24_RS27780 (LOY24_27755)	ycaC	6202105..6202734 (-)	630	WP_012274792.1	isochorismate family cysteine hydrolase YcaC	-
LOY24_RS27785 (LOY24_27760)	-	6202870..6203781 (+)	912	WP_016489788.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 496 a.a.
• Molecular weight: 52864.61 Da
• Isoelectric Point: 7.7101

>NTDB_id=627537 LOY24_RS27765 WP_258654355.1 6197293..6198783(+) (comM) [Pseudomonas putida strain B21-029]
MSLALVHSRAQVGVQAPSVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPAASLAEVECLGELALSGKLRAVQGVLPAALAAREAGRSLVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLVLHQRPYPDLSEVQGQLAAKRALMLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
EASADVAAKVAQAREVQQRRQGCVNAFLDLEGLRRHCGLAAVDQAWLEGACERLTLSLRAAHRLLKVARTLADLEGCEAI
GRPHLAEALQYRPGNS

Nucleotide

• Length: 1491 bp

>NTDB_id=627537 LOY24_RS27765 WP_258654355.1 6197293..6198783(+) (comM) [Pseudomonas putida strain B21-029]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTAGGTGTGCAGGCACCCTCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCCATCTGACCCTGGTCGGCCTGCCAGAAACCACGGTCAAGGAAAGCAAGGACCGCGTACGCAGCGCTATCG
TCAACTCCGGGCTGAACTACCCGCAGCGGCGCATTACCCAGAACCTGGCCCCCGCCGACTTGCCCAAGGATGGCGGGCGC
TACGACCTGGCCATTGCCCTGGGCATCCTGGCCGCCGACGGCCAGGTGCCAGCGGCCAGCCTTGCCGAGGTCGAGTGCCT
GGGCGAACTGGCGTTGTCGGGCAAATTGCGTGCGGTGCAAGGCGTGCTGCCGGCGGCCCTGGCGGCACGCGAGGCGGGCC
GCTCGCTGGTGGTTCCCCGGGAGAATGCCGAAGAAGCCAGCCTGGCCGGCGGGCTGGTGGTGTATGCGGTGGGGCACCTA
CTGGAGCTGGTCGCCCACCTGAACGGCCAGGTGCCGCTGCCGCCTTACGCGGCCAACGGTTTGGTCCTGCATCAACGCCC
CTACCCCGACCTGAGCGAGGTACAGGGCCAGCTGGCGGCCAAGCGCGCATTGATGCTGGCAGCGGCTGGGGCGCACAACT
TGTTGTTCACCGGGCCACCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CACGAGGCGCTCGAGGTGGCGGCCATCCAGTCGGTCAGCGGGCATACACCGCTGAGCAGTTGGCCGCAGCGACCGTTTCG
CCACCCCCACCACTCCGCATCCGGCCCGGCACTGGTCGGTGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAGCTGCCAGAGTTCGAGCGGCGCGTGCTGGAGGTGCTACGCGAGCCGTTGGAGTCG
GGCGAAATCGTCATAGCCCGGGCCCGCGACAAGGTGCGCTTTCCGGCGCGCTTTCAGCTGGTGGCGGCGATGAACCCATG
CCCTTGCGGCTACCTGGGCGACCCTACTGGCCGCTGCCGTTGCAGCACCGAGCAGATCGCGCGGTACCGCAACAAGCTGT
CCGGGCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTGGCCCGCGAGAGCACCACGCTGAACAACCAGCCCTGTGGT
GAAGCCAGTGCTGATGTGGCCGCCAAGGTGGCGCAGGCGCGGGAGGTACAGCAGCGCCGCCAAGGGTGTGTGAATGCGTT
TCTCGACCTCGAAGGGTTGCGCCGCCATTGCGGATTGGCGGCGGTGGACCAGGCATGGCTGGAGGGGGCCTGCGAGCGGT
TGACCCTGTCGTTGCGGGCGGCGCACCGGTTATTGAAAGTGGCAAGGACACTGGCGGACCTGGAGGGTTGCGAGGCGATT
GGCCGGCCACATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAACAGTTAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (400-492)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-391)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	56.225	100	0.565
comM	Haemophilus influenzae Rd KW20	55.6	100	0.56
comM	Vibrio cholerae strain A1552	55.354	99.798	0.552
comM	Glaesserella parasuis strain SC1401	53.293	100	0.538
comM	Legionella pneumophila str. Paris	49.194	100	0.492
comM	Legionella pneumophila strain ERS1305867	49.194	100	0.492
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.918	100	0.476