Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY54_RS26690 Genome accession   NZ_CP087180
Coordinates   5759727..5761220 (+) Length   497 a.a.
NCBI ID   WP_258608608.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-032     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5754727..5766220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY54_RS26660 (LOY54_26635) - 5755256..5755951 (+) 696 WP_045200972.1 HAD family hydrolase -
  LOY54_RS26665 (LOY54_26640) sutA 5756008..5756334 (-) 327 WP_045200970.1 transcriptional regulator SutA -
  LOY54_RS26670 (LOY54_26645) - 5756799..5758133 (-) 1335 WP_045200968.1 ammonium transporter -
  LOY54_RS26675 (LOY54_26650) glnK 5758174..5758512 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  LOY54_RS26680 (LOY54_26655) - 5758842..5759105 (+) 264 WP_195885308.1 accessory factor UbiK family protein -
  LOY54_RS26685 (LOY54_26660) - 5759113..5759466 (+) 354 WP_258608605.1 gamma-glutamylcyclotransferase family protein -
  LOY54_RS26690 (LOY54_26665) comM 5759727..5761220 (+) 1494 WP_258608608.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LOY54_RS26695 (LOY54_26670) - 5761276..5762706 (+) 1431 WP_093378095.1 mechanosensitive ion channel family protein -
  LOY54_RS26700 (LOY54_26675) - 5762710..5763996 (-) 1287 WP_258608609.1 FAD-binding oxidoreductase -
  LOY54_RS26705 (LOY54_26680) - 5764108..5765598 (-) 1491 WP_258608610.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52801.43 Da        Isoelectric Point: 7.3669

>NTDB_id=627467 LOY54_RS26690 WP_258608608.1 5759727..5761220(+) (comM) [Pseudomonas sp. B21-032]
MSLALVHSRAQVGVSAPAVSVEAHLANGLPALTLVGLPEATVKESKDRVRSAILNSGLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQFPIAALGEVECLGELALSGAIRSVQGVLPAALAAREAGRALVVPQENAEEACLASGLVVFAVSHL
LELVAHFNGQSPLNPYAANGLLLQIRPYPDLNEVQGQQAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIQSVASHVPLNSWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKIRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIQRYRNKLSGPLLDRIDLHLTVAREATALSTNSSH
GESSATIAAQVTAARDIQQQRQGCANAFLDLPGLRHYCGLSTADQSWLESACERLTLSLRAAHRLLKVARTLADLEQAEN
IGRGHLAEALHYRPSNQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=627467 LOY54_RS26690 WP_258608608.1 5759727..5761220(+) (comM) [Pseudomonas sp. B21-032]
ATGTCCCTCGCCCTTGTCCACAGCCGTGCCCAGGTCGGTGTTTCGGCCCCGGCGGTCAGTGTTGAAGCGCATCTGGCCAA
TGGTCTGCCGGCACTGACCCTGGTTGGCCTGCCGGAAGCGACCGTGAAAGAAAGCAAGGATCGGGTGCGCAGCGCGATCC
TCAATTCCGGCCTGGAATTCCCCGCCCGGCGCATCACCCTTAACCTTGCTCCCGCGGATTTACCCAAGGATGGCGGACGC
TTTGACCTAGCCATCGCCCTGGGGATCCTTGCCGCCAACGGCCAGTTCCCGATTGCAGCGCTTGGCGAGGTGGAATGCCT
GGGTGAACTGGCGCTGTCCGGGGCAATCCGCTCGGTGCAAGGCGTACTGCCCGCTGCCTTGGCGGCACGAGAAGCCGGCC
GGGCCTTGGTGGTGCCGCAAGAGAATGCCGAAGAAGCCTGTTTAGCATCGGGCCTGGTAGTGTTTGCAGTCAGTCACCTG
CTGGAACTGGTCGCCCACTTCAACGGCCAGAGCCCGCTCAATCCCTACGCTGCCAACGGCCTGTTGCTACAGATCCGTCC
CTACCCCGACCTCAACGAAGTACAGGGCCAGCAAGCCGCCAAGCGCGCACTGCTGGTTGCCGCCGCCGGTGCGCACAACC
TGCTGTTCAGCGGCCCACCGGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGCCTGTTGCCACCGCTGGATGAA
CGCGAAGCGCTGGAGGTGGCGGCGATACAGTCGGTGGCCAGCCATGTGCCGCTGAACAGTTGGCCGCAGCGGCCGTTTCG
CCATCCGCATCACTCGGCCTCCGGTGCTGCGCTGGTCGGCGGTGGCAGCCGACCGCAACCAGGAGAGATAACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAACTGCCGGAGTTCGAGCGGCGGGTACTGGAAGTGCTGCGCGAACCGCTGGAATCC
GGCGAAATCGTCATCGCCCGGGCCAAGGACAAAATCCGCTTTCCAGCGCGCTTCCAGCTGGTCGCCGCCATGAACCCCTG
CCCCTGTGGATATCTTGGCGACCCCACCGGCCGCTGTCGCTGCAGCAGCGAACAGATCCAGCGCTACCGCAACAAACTCT
CCGGGCCCCTGCTCGACCGTATCGACCTGCACCTGACCGTCGCCCGCGAAGCCACGGCACTGTCCACCAACAGCAGCCAC
GGCGAAAGCAGCGCCACCATTGCCGCGCAAGTCACCGCCGCCCGCGACATCCAGCAACAGCGCCAGGGCTGTGCCAACGC
CTTCCTCGACCTGCCCGGCCTGCGCCATTACTGCGGGTTATCCACAGCCGACCAGAGCTGGCTGGAAAGCGCCTGCGAAC
GCCTGACCCTGTCCTTGCGCGCCGCCCATCGCCTGCTCAAGGTGGCGCGCACCCTGGCCGACCTGGAACAGGCTGAAAAC
ATCGGACGCGGGCACCTGGCTGAAGCGCTGCACTATCGCCCGAGCAACCAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.96

99.598

0.557
  comM Vibrio campbellii strain DS40M4

55.96

99.598

0.557
  comM Haemophilus influenzae Rd KW20

54.291

100

0.547
  comM Glaesserella parasuis strain SC1401

53.693

100

0.541
  comM Legionella pneumophila str. Paris

49.395

99.799

0.493
  comM Legionella pneumophila strain ERS1305867

49.395

99.799

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.473