Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY55_RS29640 Genome accession   NZ_CP087176
Coordinates   6446458..6447951 (+) Length   497 a.a.
NCBI ID   WP_258667241.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-040     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6441458..6452951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY55_RS29600 (LOY55_29555) sutA 6441508..6441831 (-) 324 WP_008050867.1 transcriptional regulator SutA -
  LOY55_RS29605 (LOY55_29560) - 6441935..6442360 (-) 426 WP_008030499.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LOY55_RS29610 (LOY55_29565) - 6442575..6443912 (-) 1338 WP_109785711.1 ammonium transporter -
  LOY55_RS29615 (LOY55_29570) glnK 6443948..6444286 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  LOY55_RS29620 (LOY55_29575) - 6444707..6444967 (+) 261 WP_046032213.1 accessory factor UbiK family protein -
  LOY55_RS29625 (LOY55_29580) - 6445079..6445384 (+) 306 WP_046033372.1 IS3 family transposase -
  LOY55_RS29630 (LOY55_29585) - 6445383..6445774 (+) 392 Protein_5860 phage antirepressor protein -
  LOY55_RS29635 (LOY55_29590) - 6445786..6446049 (-) 264 WP_046030625.1 HigA family addiction module antitoxin -
  LOY55_RS29640 (LOY55_29595) comM 6446458..6447951 (+) 1494 WP_258667241.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LOY55_RS29645 (LOY55_29600) - 6448138..6449541 (+) 1404 WP_258667243.1 SrfA family protein -
  LOY55_RS29650 (LOY55_29605) - 6449559..6452624 (+) 3066 WP_258667259.1 virulence factor SrfB -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53075.16 Da        Isoelectric Point: 7.8780

>NTDB_id=627370 LOY55_RS29640 WP_258667241.1 6446458..6447951(+) (comM) [Pseudomonas sp. B21-040]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRSLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPYVSNGLLYASKPYPDLNEVQGQLSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLVE
NEALEVAAIQSVSSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAAVLVADARERQHKRQGCANAFLDLPGLRKHCTLSTADENWLESACERLTLSLRAAHRLLKVARTLADLEQTDE
IKREHLAEALQYRPSAN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=627370 LOY55_RS29640 WP_258667241.1 6446458..6447951(+) (comM) [Pseudomonas sp. B21-040]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAAATCGGCGTGGATGCGCCTGCCGTTACCGTTGAAGTCCACCTGGCCAA
CGGTTTGCCATCCCTGACCATGGTCGGTTTGCCGGAGGCGGCGGTGAAGGAAAGCAAGGACCGCGTACGCAGCGCGATCA
TCAATTCCGGACTGCAATTCCCGGCGCGGCGCATCACGTTGAATCTCGCCCCGGCGGATTTGCCCAAGGACGGTGGCCGG
TTTGATCTGGCGATTGCCTTGGGGATTCTGTCCGCCAGTGTGCAGGTGCCGACGTTGACGCTGGATGATGTGGAATGCCT
GGGAGAGCTCGCGCTCTCGGGCGCTGTACGAGCCGTGCGTGGGGTATTGCCGGCGGCATTGGCGGCGCGTAAGGCCGGGC
GGTCGCTAATGGTGCCGCGGGCAAATGCCGAAGAGGCATGCCTTGCCTCAGGGCTTAAGGTGATCGCGGTGGATCATTTG
CTGGAAGCGGTCGCGCATTTTAATGGGCACACACCGGTCGAGCCTTACGTTTCCAATGGTTTGCTCTACGCCAGCAAACC
CTATCCCGACCTCAATGAAGTGCAGGGGCAACTCTCGGCCAAACGCGCCTTGCTGATTGCCGCGGCAGGGGCACATAACC
TGTTGTTCAGCGGGCCGCCGGGGACTGGGAAAACGTTGTTGGCCAGCCGTCTTCCGGGATTGTTACCGCCACTGGTTGAA
AATGAGGCACTGGAGGTCGCGGCAATCCAGTCAGTTTCCAGTTGCGTGCCCTTGAGCCATTGGCCACAACGACCGTTCCG
CCAACCTCATCACTCAGCCTCCGGACCGGCATTGGTTGGCGGCGGTTCGAAACCGCAACCTGGCGAAATCACCCTCGCCC
ACCACGGCGTACTGTTCCTCGACGAACTCCCGGAATTCGATCGCAAGGTATTGGAGGTGTTAAGGGAGCCGCTGGAATCC
GGCCATATCGTGATTTCCCGGGCCAAGGACCGTGTGAGATTCCCCGCCCGCTTTCAATTGGTCGCGGCGATGAATCCTTG
CCCCTGTGGATATCTTGGCGAACCGAGCGGCAAATGCAGTTGTACGCCGGACATGGTCCAGCGCTACCGCAACAAACTGT
CAGGCCCATTGCTGGACCGAATCGACCTGCATCTGACTGTTGCCCGGGAAGCCACGGCGCTCAATCCGGCGCTTAAACCC
GGTGACGACACCGCCACCGCAGCGGTACTAGTGGCTGACGCACGAGAACGGCAACACAAGCGCCAGGGCTGCGCCAATGC
GTTCCTCGATCTGCCGGGTTTGCGCAAACATTGCACGTTATCCACAGCCGACGAAAACTGGCTGGAATCCGCTTGTGAAA
GATTGACGCTGTCGCTGAGAGCCGCACATCGGCTGCTTAAAGTAGCCCGAACGCTGGCGGATCTTGAGCAAACCGATGAG
ATAAAGCGCGAGCACCTGGCCGAGGCATTGCAGTACCGGCCGAGTGCAAATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Haemophilus influenzae Rd KW20

52.906

100

0.531
  comM Glaesserella parasuis strain SC1401

52.6

100

0.529
  comM Legionella pneumophila str. Paris

49.799

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.799

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.908

100

0.463