Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY43_RS27695 Genome accession   NZ_CP087175
Coordinates   6187949..6189442 (+) Length   497 a.a.
NCBI ID   WP_258708979.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-041     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6182949..6194442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY43_RS27675 (LOY43_27640) - 6183154..6183606 (+) 453 WP_224794712.1 N-acetyltransferase -
  LOY43_RS27680 (LOY43_27645) - 6183641..6183811 (+) 171 WP_172828102.1 hypothetical protein -
  LOY43_RS27685 (LOY43_27650) - 6184406..6185881 (+) 1476 WP_258708977.1 hypothetical protein -
  LOY43_RS27690 (LOY43_27655) - 6185899..6187584 (+) 1686 WP_258708978.1 rod shape-determining protein -
  LOY43_RS27695 (LOY43_27660) comM 6187949..6189442 (+) 1494 WP_258708979.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LOY43_RS27700 (LOY43_27665) - 6189439..6190653 (-) 1215 WP_258708980.1 aldose 1-epimerase family protein -
  LOY43_RS27705 (LOY43_27670) - 6190873..6192849 (-) 1977 WP_007920409.1 methyl-accepting chemotaxis protein -
  LOY43_RS27710 (LOY43_27675) - 6193034..6193954 (-) 921 WP_095049341.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52923.10 Da        Isoelectric Point: 8.2077

>NTDB_id=627342 LOY43_RS27695 WP_258708979.1 6187949..6189442(+) (comM) [Pseudomonas sp. B21-041]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHASKPYPDLNEVQGQVAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPQVKP
GEDSASAAALVAEARERQQKRQGCANAFLDLPGLKRHCKLSTADEKWLESACERLTLSLRSAHRLLKVARTLADLEQVDA
IKREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=627342 LOY43_RS27695 WP_258708979.1 6187949..6189442(+) (comM) [Pseudomonas sp. B21-041]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGAAGCCCCCGCTGTCACCGTCGAAGTCCATCTGGCCAA
CGGTCTGCCGTCGCTGACCATGGTCGGGCTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACCTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTTGACCTGGCGATTGCCTTGGGAATTCTATCGGCGAGTGTGCAGGTGCCGTGTCTGACGCTGGATGATGTGGAATGTCT
GGGCGAGTTGGCGTTGTCCGGCGCCGTACGAGCGGTGCGTGGGGTGTTGCCGGCAGCGTTGGCGGCGCGCAAGGCGGGTC
GTGCACTGGTGGTGCCGCGAGCGAATGCCGAGGAGGCGTGTCTGGCTTCGGGATTGAAGGTGTTTGCGGTGGATCATTTG
CTGGAGGCGGTGGCGCATTTCAATGGGCATACGCCGGTTGAGCCCTATGTCTCCGACGGACTGATGCACGCCAGCAAACC
TTATCCCGACTTGAATGAAGTGCAGGGGCAAGTGGCGGCGAAACGAGCGTTGCTGATTGCTGCTGCGGGGGCCCATAACT
TGCTGTTCAGCGGGCCGCCTGGGACGGGTAAGACATTGCTGGCGAGTCGCCTGCCGGGACTGTTGCCGCCGCTGGCCGAG
AGTGAAGCGCTGGAGGTCGCAGCGATTCAGTCAGTCGCCAGTGGTGCACCGCTAACCCATTGGCCGCAGCGTCCCTTCCG
TCAACCGCACCACTCGGCCTCCGGGCCGGCACTGGTCGGTGGCAGCTCAAAACCGCAACCCGGTGAGATCACCCTCGCCC
ACCACGGCGTGCTGTTTCTCGATGAGCTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCC
GGGCATATCGTGATTGCCCGGGCCAAGGATCGCGTGCGTTTCCCGGCGCGATTTCAGTTGGTGGCGGCGATGAACCCGTG
TCCCTGTGGATATCTTGGCGAGCCGAGTGGCAAGTGTTCCTGCACGCCGGACATGGTGCAGCGCTATCGCAACAAACTGT
CGGGGCCGTTGCTGGACCGGATCGACTTGCACCTGACAGTGGCGCGGGAAGCGACGGCATTGAACCCGCAGGTGAAGCCG
GGAGAGGACAGCGCCAGCGCTGCGGCGTTGGTAGCCGAGGCTCGCGAACGACAGCAGAAGCGTCAGGGCTGTGCCAATGC
GTTTCTCGATCTGCCGGGATTGAAGCGGCACTGCAAGTTATCCACAGCCGATGAGAAATGGCTGGAATCAGCCTGTGAAC
GGCTGACGCTTTCGCTGCGCTCGGCCCATCGCCTGCTCAAGGTCGCCCGCACTCTGGCAGACCTCGAGCAAGTCGATGCA
ATCAAACGTGAACACTTGGCCGAGGCACTGCAATACCGGCCGGCGACACCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.6

100

0.529
  comM Legionella pneumophila str. Paris

50.201

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.201

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.108

100

0.465