Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY44_RS00635 Genome accession   NZ_CP087172
Coordinates   134010..135497 (-) Length   495 a.a.
NCBI ID   WP_139674532.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-044     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 129010..140497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY44_RS00615 (LOY44_00615) - 129547..129831 (-) 285 WP_258599675.1 DUF6124 family protein -
  LOY44_RS00620 (LOY44_00620) - 130519..132306 (-) 1788 WP_258599676.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LOY44_RS00625 (LOY44_00625) - 132553..133566 (-) 1014 WP_139674538.1 alpha/beta hydrolase -
  LOY44_RS00630 (LOY44_00630) - 133598..133849 (-) 252 WP_139674535.1 DUF2790 domain-containing protein -
  LOY44_RS00635 (LOY44_00635) comM 134010..135497 (-) 1488 WP_139674532.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LOY44_RS00640 (LOY44_00640) - 135548..135982 (-) 435 WP_139674529.1 DUF2493 domain-containing protein -
  LOY44_RS00645 (LOY44_00645) mgtA 135993..138704 (-) 2712 WP_258701220.1 magnesium-translocating P-type ATPase -
  LOY44_RS00650 (LOY44_00650) - 139534..139797 (-) 264 WP_102683536.1 accessory factor UbiK family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52927.68 Da        Isoelectric Point: 8.0886

>NTDB_id=627249 LOY44_RS00635 WP_139674532.1 134010..135497(-) (comM) [Pseudomonas sp. B21-044]
MSLALVHSRAQVGVQAPAVSVETHLANGLPTLTLVGLPETTVKESKDRVRSAIVNSGLDYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVAALDSIECLGELALSGTLRPVQGVLPAALAARDAGRALVVPRENAEEASLASGLVVYAVGHL
RELVAHLNAQPALSPYAANGLLLEQRPYPDLSEVQGQIAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIRSVSGHAPLDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDRVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIQRYRNKLSGPLLDRIDLHLTVARESTVLTHQPSG
ETSASVGQRVAEARELQQRRQGCANAFLDLKGLRRHCPLEPVDQAWLEQACERLTLSLRAAHRLLKVARTLADLEGAQSI
ARSHLAEALQYRPSA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=627249 LOY44_RS00635 WP_139674532.1 134010..135497(-) (comM) [Pseudomonas sp. B21-044]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTCGGGGTACAGGCACCGGCTGTCAGCGTCGAAACCCACTTGGCCAA
CGGTCTGCCCACGCTCACCTTGGTCGGTCTGCCGGAGACCACGGTCAAGGAAAGCAAGGACCGGGTCCGCAGTGCCATCG
TCAACTCCGGCCTGGACTACCCGGCCCGGCGCATCACCCAGAGCCTCGCCCCGGCCGATCTACCCAAGGACGGTGGCCGC
TACGACCTGGCCATCGCCCTGGGCATCCTGGCCGCCAATGGCCAGGTACCGGTTGCCGCCCTCGACAGCATCGAATGCCT
GGGCGAACTGGCGCTGTCAGGTACTTTGCGCCCGGTACAGGGCGTACTGCCTGCGGCACTGGCGGCGCGAGACGCGGGTC
GAGCGCTGGTGGTCCCCAGGGAAAACGCCGAAGAGGCGAGCCTGGCCAGCGGCCTGGTGGTGTACGCGGTGGGGCATCTG
CGGGAACTGGTGGCCCACCTGAATGCGCAACCGGCATTGTCACCCTATGCCGCGAATGGCCTATTGCTGGAGCAACGCCC
CTACCCGGACCTCAGCGAAGTACAAGGCCAGATCGCTGCCAAGCGGGCGCTGCTGGTCGCCGCAGCCGGCGCGCACAACC
TGCTGTTCTCCGGCCCGCCGGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCACCGCTGGACGAG
CGCGAGGCGCTGGAGGTGGCGGCGATTCGCTCGGTCAGCGGCCATGCCCCGCTCGATTGCTGGCCACAGCGGCCGTTTCG
CCACCCCCACCATTCAGCCTCTGGCCCGGCACTGGTAGGCGGTGGCAGCCGACCGCAACCCGGCGAGATCACCCTGGCGC
ACCACGGCGTGTTGTTTCTCGACGAGCTGCCCGAGTTCGAACGACGCGTGCTGGAGGTACTGCGCGAGCCGCTGGAGTCG
GGCGAGATCGTGGTGGCCCGGGCCAAGGACCGGGTGCGCTTCCCGGCGCGCTTTCAGCTGGTGGCGGCCATGAACCCTTG
CCCCTGCGGCTACCTGGGTGACCCCACCGGCCGCTGTCGCTGCAGCAGCGAGCAGATCCAGCGCTACCGCAACAAGCTGT
CCGGCCCCCTGCTCGACCGCATCGACCTGCACCTGACGGTGGCCCGGGAAAGTACCGTGCTGACCCACCAGCCCAGCGGC
GAAACCAGCGCCAGTGTTGGCCAGCGGGTGGCCGAGGCACGGGAGCTGCAGCAGCGCCGGCAGGGCTGCGCCAATGCCTT
CCTCGACCTCAAGGGGCTGCGCCGGCACTGCCCGCTGGAGCCGGTCGACCAGGCCTGGCTGGAGCAGGCCTGCGAACGGT
TGACGTTGTCGTTGCGGGCAGCGCACCGGCTGTTGAAGGTGGCCCGCACCCTGGCGGACCTGGAGGGGGCGCAATCCATA
GCCAGGTCGCACCTGGCGGAGGCGCTGCAGTACCGGCCCAGCGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.09

100

0.558
  comM Glaesserella parasuis strain SC1401

54.491

100

0.552
  comM Vibrio campbellii strain DS40M4

54.949

100

0.549
  comM Vibrio cholerae strain A1552

54.949

100

0.549
  comM Legionella pneumophila str. Paris

48.992

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.61

100

0.483