Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LOY26_RS25935 Genome accession   NZ_CP087169
Coordinates   5734100..5735587 (+) Length   495 a.a.
NCBI ID   WP_186664646.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-047     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5729100..5740587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY26_RS25915 (LOY26_25890) - 5729451..5730782 (-) 1332 WP_033702228.1 ammonium transporter -
  LOY26_RS25920 (LOY26_25895) glnK 5730830..5731168 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  LOY26_RS25925 (LOY26_25900) - 5731553..5731813 (+) 261 WP_033702230.1 accessory factor UbiK family protein -
  LOY26_RS25930 (LOY26_25905) - 5731817..5733844 (-) 2028 WP_258714244.1 DUF4034 domain-containing protein -
  LOY26_RS25935 (LOY26_25910) comM 5734100..5735587 (+) 1488 WP_186664646.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LOY26_RS25940 (LOY26_25915) - 5735746..5737533 (+) 1788 WP_258714245.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LOY26_RS25945 (LOY26_25920) - 5737728..5738639 (+) 912 WP_033702243.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52659.28 Da        Isoelectric Point: 7.5238

>NTDB_id=627192 LOY26_RS25935 WP_186664646.1 5734100..5735587(+) (comM) [Pseudomonas sp. B21-047]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLDYPARRITQNLAPADLPKDGGR
YDLAIALGILAASGQVPVATLCDIECLGELALSGQLRPVQGVLPAALAARDAGRALVVPRENAEEASLAGGLVVYAIGHL
LELVAHLNGQVPLAPYAANGLILNSRPYPDLSEVQGQVAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIQSVSGHAPLNSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSTDQVQRYRNKLSGPLLDRIDLHLTVARETTTLNNQPSG
DTSAAVAERVAEARDLQQRRQGCANAFLDLNGLRSHCLLEAADQAWLETACERLNLSLRAAHRLLKVARTLADLEGVASI
ARGHLGEALQYRPGS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=627192 LOY26_RS25935 WP_186664646.1 5734100..5735587(+) (comM) [Pseudomonas sp. B21-047]
ATGTCACTTGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGGCTCCCCCACCTCACCCTGGTCGGCCTGCCCGAAACCACGGTCAAGGAAAGCAAAGACCGGGTACGCAGTGCCATCG
TCAACTCAGGCCTGGACTACCCGGCAAGGCGCATCACCCAGAACCTGGCGCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCCATTGCCCTAGGCATTCTGGCCGCCAGTGGCCAGGTCCCGGTGGCCACCCTCTGCGACATCGAGTGCCT
GGGCGAGCTGGCGCTGTCCGGGCAACTGCGCCCTGTGCAGGGCGTGTTGCCGGCGGCGCTGGCGGCAAGGGATGCGGGTC
GGGCATTGGTGGTACCACGCGAAAACGCCGAAGAAGCCAGCCTTGCAGGTGGGCTGGTGGTGTATGCCATCGGGCACCTG
CTGGAACTGGTCGCCCACCTGAATGGCCAGGTACCGTTAGCGCCCTATGCCGCCAATGGCTTGATATTGAACAGCCGGCC
CTACCCCGACCTCAGCGAGGTACAGGGCCAGGTGGCGGCCAAGCGTGCCTTGCTGCTGGCCGCAGCCGGGGCGCACAACC
TGTTGTTCACCGGCCCGCCCGGCACTGGCAAGACCTTGCTCGCCAGCCGCTTGCCAGGGCTGTTGCCGCCGCTGGACGAG
CGCGAAGCGCTGGAGGTGGCAGCCATTCAGTCGGTCAGCGGCCATGCGCCGCTGAACAGCTGGCCACAGCGCCCTTTCCG
CCACCCGCACCACTCGGCCTCAGGCCCTGCACTGGTGGGCGGCAGCAGCCGGCCACAGCCGGGCGAAATCACCCTGGCTC
ATCATGGTGTGCTGTTTCTCGATGAGTTGCCGGAATTCGAGCGGCGCGTGCTGGAGGTACTGCGCGAACCGCTCGAGTCC
GGCGAGATCGTGATTGCCAGGGCGCGGGACAAAGTGCGCTTCCCGGCGCGTTTTCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTACCTCGGCGACCCGAGCGGCCGCTGCCGCTGCAGCACCGACCAGGTCCAGCGTTATCGCAACAAGCTGT
CGGGGCCGCTGCTGGACCGTATTGACCTGCACCTGACCGTGGCGCGCGAAACCACCACGCTGAACAACCAACCCAGCGGT
GACACCAGCGCTGCGGTCGCCGAGCGGGTGGCCGAGGCGCGCGACCTGCAGCAACGTCGGCAAGGGTGCGCCAATGCGTT
TCTCGACCTCAACGGTTTGCGCAGCCATTGCCTGCTGGAGGCGGCCGACCAGGCTTGGCTGGAGACTGCCTGCGAGCGAT
TGAACTTGTCGTTGCGCGCTGCCCATCGGCTGCTGAAAGTGGCGCGCACGCTGGCGGACCTGGAGGGCGTGGCGTCGATT
GCCCGGGGGCATCTGGGCGAGGCGTTGCAGTATCGGCCTGGTAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.912

100

0.564
  comM Haemophilus influenzae Rd KW20

55.2

100

0.558
  comM Vibrio cholerae strain A1552

55.354

100

0.554
  comM Glaesserella parasuis strain SC1401

54.6

100

0.552
  comM Legionella pneumophila str. Paris

49.497

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.497

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.473