Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   N1207_RS15200 Genome accession   NZ_CP104097
Coordinates   2869493..2870497 (-) Length   334 a.a.
NCBI ID   WP_003229718.1    Uniprot ID   O32055
Organism   Bacillus subtilis strain GL-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2864493..2875497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1207_RS15170 (N1207_15170) yrbG 2865467..2866123 (-) 657 WP_015483509.1 DUF421 domain-containing protein -
  N1207_RS15175 (N1207_15175) - 2866321..2866710 (+) 390 WP_031315243.1 TIGR04086 family membrane protein -
  N1207_RS15180 (N1207_15180) yajC 2866767..2867033 (-) 267 WP_004398708.1 preprotein translocase subunit YajC -
  N1207_RS15185 (N1207_15185) tgt 2867070..2868215 (-) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  N1207_RS15190 (N1207_15190) queA 2868242..2869270 (-) 1029 WP_041850173.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  N1207_RS15195 (N1207_15195) yrzS 2869300..2869500 (-) 201 WP_003222669.1 DUF2905 domain-containing protein -
  N1207_RS15200 (N1207_15200) ruvB 2869493..2870497 (-) 1005 WP_003229718.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  N1207_RS15205 (N1207_15205) ruvA 2870508..2871113 (-) 606 WP_003229717.1 Holliday junction branch migration protein RuvA Machinery gene
  N1207_RS15210 (N1207_15210) bofC 2871252..2871764 (-) 513 WP_003229715.1 sporulation cell-cell signaling protein BofC -
  N1207_RS15215 (N1207_15215) csbX 2871812..2873119 (-) 1308 WP_015483512.1 MFS transporter -
  N1207_RS15220 (N1207_15220) iolG 2873190..2874215 (-) 1026 WP_032726305.1 inositol 2-dehydrogenase -
  N1207_RS15225 (N1207_15225) yrzF 2874453..2875100 (+) 648 WP_003246159.1 phosphotransferase -
  N1207_RS15230 (N1207_15230) - 2875146..2875268 (-) 123 WP_003229707.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37467.78 Da        Isoelectric Point: 5.1631

>NTDB_id=627018 N1207_RS15200 WP_003229718.1 2869493..2870497(-) (ruvB) [Bacillus subtilis strain GL-4]
MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVMSRLEYYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
AVYHHFQMEAPRYD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=627018 N1207_RS15200 WP_003229718.1 2869493..2870497(-) (ruvB) [Bacillus subtilis strain GL-4]
ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGATAGAGCAAAGCCTGAGGCCGCAAAATCTGGC
ACAGTATATCGGGCAGCATAAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAGGAGACGCTGG
ATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAACAACGCTTGCTTCGATTGTTGCTAATGAAATGGGAGTGGAA
TTGCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACGGCGCTGGAACCGGGAGATGT
ATTATTTATTGATGAAATACATAGGCTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG
ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGGCTCGACCTTCCGCCTTTTACGCTGGTAGGAGCCACGACG
AGGGTGGGGCTTTTGACGGCTCCTTTAAGAGACAGATTCGGCGTCATGTCTCGCCTTGAGTACTATACACAAGAAGAACT
GGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTTGAGATTGATAAACCATCGGCGCTTGAAATTGCAAGAAGAT
CGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGCGATTTCGCCCAAGTGCTGGGTGACAGCAGGATT
ACGGAAGACATTTCTCAGAATGCGCTGGAGCGGCTTCAGGTTGACCGCCTCGGTTTGGATCATATTGATCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAACGGCGGCCCAGTAGGCCTTGATACGATTTCAGCTACCATCGGCGAGGAATCGCATA
CGATTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGATCGTGACACCG
GCCGTTTATCATCATTTCCAAATGGAGGCTCCCCGATATGACTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ruvB Streptococcus pneumoniae TIGR4

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae R6

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae D39

60.429

97.605

0.59
  ruvB Synechocystis sp. PCC 6803

57.143

98.503

0.563
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518