Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LN139_RS25020 Genome accession   NZ_CP087138
Coordinates   5056158..5056493 (+) Length   111 a.a.
NCBI ID   WP_268944793.1    Uniprot ID   -
Organism   Pseudomonas sp. KNUC1026     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5051158..5061493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN139_RS23750 (LN139_23750) - 5051855..5052736 (+) 882 WP_236357501.1 glycosyltransferase -
  LN139_RS23755 (LN139_23755) - 5052737..5053363 (-) 627 WP_236357503.1 hypothetical protein -
  LN139_RS23760 (LN139_23760) - 5053459..5054559 (-) 1101 WP_236357505.1 O-antigen ligase family protein -
  LN139_RS25010 - 5054825..5055546 (+) 722 Protein_4707 ABC transporter transmembrane domain-containing protein -
  LN139_RS25015 - 5055835..5056230 (+) 396 WP_268944888.1 ATP-binding cassette domain-containing protein -
  LN139_RS25020 rcrQ 5056158..5056493 (+) 336 WP_268944793.1 ATP-binding cassette domain-containing protein Regulator
  LN139_RS23770 (LN139_23770) - 5056611..5057005 (+) 395 Protein_4710 sulfotransferase family 2 domain-containing protein -
  LN139_RS23775 (LN139_23775) cysC 5056998..5057597 (+) 600 WP_236357507.1 adenylyl-sulfate kinase -
  LN139_RS23780 (LN139_23780) hldE 5057670..5059090 (+) 1421 Protein_4712 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE -
  LN139_RS23785 (LN139_23785) - 5059113..5060072 (-) 960 WP_236357509.1 metal ABC transporter ATPase -
  LN139_RS23790 (LN139_23790) - 5060109..5060918 (-) 810 WP_236357512.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12185.13 Da        Isoelectric Point: 6.8803

>NTDB_id=626922 LN139_RS25020 WP_268944793.1 5056158..5056493(+) (rcrQ) [Pseudomonas sp. KNUC1026]
MLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQGALDQVMKGRTTLVIAHRLSTIEKADLILVMDQGRIVE
RGTHAQLLTMNGYYTRLHAMGLEEPGSEPAI

Nucleotide


Download         Length: 336 bp        

>NTDB_id=626922 LN139_RS25020 WP_268944793.1 5056158..5056493(+) (rcrQ) [Pseudomonas sp. KNUC1026]
GTGCTGCTCTCCGGCGGCCAGCGCCAGCGCCTGGCCATCGCCCGTGCACTGCTCAAGAACGCCCCCTTGCTGATCCTCGA
TGAAGCCACCTCGGCACTGGATACCGAGTCGGAACGGCATATCCAGGGTGCGCTGGATCAGGTCATGAAAGGCCGCACAA
CGCTGGTGATCGCGCACCGGTTGTCCACCATCGAAAAAGCCGATCTGATCCTGGTGATGGATCAGGGGCGCATCGTCGAG
CGGGGTACACACGCTCAGTTGCTCACGATGAATGGCTACTACACGCGCCTGCACGCCATGGGGCTGGAGGAGCCTGGCAG
CGAGCCAGCCATCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(3-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

61.765

91.892

0.568
  comA/nlmT Streptococcus mutans UA159

54.737

85.586

0.468
  comA Streptococcus mitis NCTC 12261

53.125

86.486

0.459
  comA Streptococcus pneumoniae Rx1

52.632

85.586

0.45
  comA Streptococcus pneumoniae D39

52.632

85.586

0.45
  comA Streptococcus pneumoniae R6

52.632

85.586

0.45
  comA Streptococcus pneumoniae TIGR4

52.632

85.586

0.45
  comA Streptococcus gordonii str. Challis substr. CH1

52.083

86.486

0.45
  comA Streptococcus mitis SK321

52.083

86.486

0.45
  rcrP Streptococcus mutans UA159

48.421

85.586

0.414