Detailed information NTG0626476

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: N2A93_RS00365
• Genome accession: NZ_CP104046
• Coordinates: 55731..56729 (+)
• Length: 332 a.a.
• NCBI ID: WP_003107456.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain KSP14
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 50731..61729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N2A93_RS00340 (N2A93_00340)	purE	51536..52024 (+)	489	WP_003107462.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
N2A93_RS00345 (N2A93_00345)	purK	52011..53096 (+)	1086	WP_003107461.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
N2A93_RS00350 (N2A93_00350)	purB	53106..54398 (+)	1293	WP_003107459.1	adenylosuccinate lyase	-
N2A93_RS00355 (N2A93_00355)	comR	54515..55432 (+)	918	WP_003107457.1	helix-turn-helix transcriptional regulator	Regulator
N2A93_RS00360 (N2A93_00360)	-	55498..55596 (+)	99	WP_199764314.1	quorum-sensing system DWW-type pheromone	-
N2A93_RS00365 (N2A93_00365)	ruvB	55731..56729 (+)	999	WP_003107456.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
N2A93_RS00370 (N2A93_00370)	-	56953..57381 (+)	429	WP_003107455.1	low molecular weight protein-tyrosine-phosphatase	-
N2A93_RS00375 (N2A93_00375)	-	57410..57811 (+)	402	WP_003105881.1	membrane protein	-
N2A93_RS00380 (N2A93_00380)	-	57808..59586 (+)	1779	WP_003107454.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37552.04 Da
• Isoelectric Point: 4.4967

>NTDB_id=626476 N2A93_RS00365 WP_003107456.1 55731..56729(+) (ruvB) [Streptococcus parauberis strain KSP14]
MTRILDEELMGDEALVERTLRPQYLREYIGQDKVKDQLTIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRMPMVVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQVDDLTEIVERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGVIT
DTITDKALDMLDVDHEGLDYVDQKILRTMIEMYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATEK
AYRHLNYPYLEK

Nucleotide

• Length: 999 bp

>NTDB_id=626476 N2A93_RS00365 WP_003107456.1 55731..56729(+) (ruvB) [Streptococcus parauberis strain KSP14]
ATGACTAGAATTTTAGATGAAGAATTAATGGGTGATGAAGCTTTAGTTGAGCGCACCCTTCGTCCTCAATATTTAAGAGA
GTATATCGGACAGGATAAGGTGAAAGACCAGCTGACTATTTTTATTGAAGCCGCCAAAATGCGTGATGAATCACTAGACC
ACGTGCTCTTGTTTGGGCCTCCTGGACTTGGTAAAACAACCATGGCTTTTGTGATTGCTAATGAACTAGGTGTCAACCTC
AAGCAAACGTCTGGTCCAGCAATTGAAAAGGCTGGTGATTTGGTAGCTGTTTTGAATGACTTGGAACCAGGAGATGTGCT
TTTCATTGATGAAATCCACCGGATGCCAATGGTAGTTGAAGAAGTCCTCTACAGTGCTATGGAAGACTTCTATATTGATA
TTATGATTGGGGCTGGTGATACAAGCCGTAGTGTCCATTTGGATTTACCTCCTTTTACCTTAATTGGAGCAACTACAAGG
GCAGGGATGCTCTCTAATCCTTTGCGTGCCCGTTTTGGAATCACTGGACACATGGAATATTACCAAGTTGATGATCTCAC
AGAAATTGTCGAACGGACAGCTGATATCTTTGAAATGGAAATTGTCCATGAAGCAGCCCAGGAATTGGCCCGCCGAAGTC
GAGGAACACCTCGTATAGCCAATCGTTTATTGAAGCGCGTGCGCGACTATGCCCAAATTATGGGTGATGGGGTAATTACA
GATACTATTACTGACAAAGCTTTAGATATGCTTGATGTTGACCATGAGGGATTGGACTACGTCGATCAGAAAATTTTACG
TACGATGATTGAAATGTACAATGGTGGACCTGTTGGTCTTGGGACACTGTCAGTGAATATTGCTGAGGAAAGAGACACAG
TTGAAGATATGTATGAACCCTATCTGATTCAAAAGGGCTTTATCATGCGAACACGGACTGGCCGTGTTGCGACAGAAAAA
GCATATCGTCATTTGAATTATCCTTACCTTGAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-326)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.361	100	0.904
ruvB	Streptococcus pneumoniae R6	90.06	100	0.901
ruvB	Streptococcus pneumoniae D39	90.06	100	0.901
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.111	97.59	0.596
ruvB	Helicobacter pylori 26695	49.39	98.795	0.488
ruvB	Synechocystis sp. PCC 6803	50	93.373	0.467