Detailed information NTG0625948

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: NYR19_RS07965
• Genome accession: NZ_CP103874
• Coordinates: 1678654..1679652 (-)
• Length: 332 a.a.
• NCBI ID: WP_302507641.1
• Uniprot ID: -
• Organism: Gallibacterium anatis strain TH22
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1673654..1684652

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR19_RS07955 (NYR19_07955)	pglZ	1674142..1676478 (+)	2337	WP_302507637.1	BREX-1 system phosphatase PglZ type B	-
NYR19_RS07960 (NYR19_07960)	brxL	1676481..1678529 (+)	2049	WP_302507639.1	protease Lon-related BREX system protein BrxL	-
NYR19_RS07965 (NYR19_07965)	ruvB	1678654..1679652 (-)	999	WP_302507641.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
NYR19_RS07970 (NYR19_07970)	ruvA	1679674..1680282 (-)	609	WP_039083346.1	Holliday junction branch migration protein RuvA	Machinery gene
NYR19_RS07975 (NYR19_07975)	-	1680495..1681382 (+)	888	WP_302507643.1	DMT family transporter	-
NYR19_RS07980 (NYR19_07980)	-	1681440..1681982 (+)	543	WP_021461818.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
NYR19_RS07985 (NYR19_07985)	-	1681993..1682835 (+)	843	WP_039154196.1	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	-
NYR19_RS07990 (NYR19_07990)	gorA	1682942..1684292 (+)	1351	Protein_1525	glutathione-disulfide reductase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37144.71 Da
• Isoelectric Point: 4.8706

>NTDB_id=625948 NYR19_RS07965 WP_302507641.1 1678654..1679652(-) (ruvB) [Gallibacterium anatis strain TH22]
MIEADRIISPTAKEEEEYIDRAIRPKLLQDYVGQPHVREQMDIFIKAAKMRNDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSIEDLTSIVVRSANCLNLQIDEQAAHEIARRSRGTPRIVNRLLRRVRDYADVKNGG
FISVEIAKLALTMLDIDSEGFDFMDRKLLMAIIERFDGGPVGLDNLAAAIGEEKETIEDVLEPYLIQQGFLQRTQRGRIA
TLHTYQHFGVSK

Nucleotide

• Length: 999 bp

>NTDB_id=625948 NYR19_RS07965 WP_302507641.1 1678654..1679652(-) (ruvB) [Gallibacterium anatis strain TH22]
ATGATTGAAGCAGACCGTATTATCAGCCCTACGGCAAAAGAGGAAGAAGAGTATATCGACCGTGCAATCCGTCCAAAATT
GTTGCAGGATTATGTTGGACAACCGCACGTTCGGGAACAGATGGATATTTTTATCAAAGCGGCGAAAATGCGTAATGATG
CACTTGATCATCTGTTGATTTTTGGCCCTCCCGGTTTGGGCAAAACCACATTAGCCAATATTGTTGCCAATGAAATGGGG
GTGAATATTCGCACCACTTCCGGCCCAGTGTTAGAAAAAGCAGGCGATTTAGCAGCAATGTTGACTAATTTAGAACCTTA
TGATGTGCTGTTTATTGATGAGATTCATCGTTTATCACCGGCAATCGAGGAGGTGTTGTATCCGGCAATGGAAGATTATC
AGCTGGATATTATGATTGGCGAGGGGCCGGCAGCACGGTCGATTAAATTGGATTTGCCGCCGTTTACGTTGGTTGGCGCA
ACGACGCGTGCCGGATCATTGACTTCGCCATTGCGAGATCGTTTTGGCATTGTGCAACGCTTGGAATTTTATTCGATTGA
AGATTTAACCTCCATTGTGGTGCGTAGCGCAAATTGCCTCAATCTTCAGATTGATGAGCAAGCGGCACACGAAATTGCAC
GCCGCTCACGCGGCACGCCACGGATTGTAAATCGATTATTACGTCGTGTTCGCGATTATGCCGATGTCAAAAATGGCGGC
TTTATTTCGGTAGAGATTGCGAAATTGGCATTAACGATGTTGGATATTGATTCAGAAGGCTTTGACTTTATGGATCGTAA
ATTGTTAATGGCGATTATTGAGCGTTTTGACGGCGGCCCGGTCGGTTTGGATAATTTAGCTGCGGCGATCGGTGAAGAGA
AAGAAACAATAGAAGATGTGTTGGAGCCTTATTTAATCCAGCAAGGTTTCTTACAACGTACACAGCGAGGAAGAATCGCC
ACACTGCATACGTATCAGCATTTTGGGGTGAGTAAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	62.346	97.59	0.608
ruvB	Streptococcus pneumoniae TIGR4	58.333	97.59	0.569
ruvB	Streptococcus pneumoniae R6	58.333	97.59	0.569
ruvB	Streptococcus pneumoniae D39	58.333	97.59	0.569
ruvB	Synechocystis sp. PCC 6803	51.964	99.699	0.518
ruvB	Helicobacter pylori 26695	53.106	96.988	0.515