Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NYR19_RS07970 Genome accession   NZ_CP103874
Coordinates   1679674..1680282 (-) Length   202 a.a.
NCBI ID   WP_039083346.1    Uniprot ID   -
Organism   Gallibacterium anatis strain TH22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1674674..1685282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS07960 (NYR19_07960) brxL 1676481..1678529 (+) 2049 WP_302507639.1 protease Lon-related BREX system protein BrxL -
  NYR19_RS07965 (NYR19_07965) ruvB 1678654..1679652 (-) 999 WP_302507641.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NYR19_RS07970 (NYR19_07970) ruvA 1679674..1680282 (-) 609 WP_039083346.1 Holliday junction branch migration protein RuvA Machinery gene
  NYR19_RS07975 (NYR19_07975) - 1680495..1681382 (+) 888 WP_302507643.1 DMT family transporter -
  NYR19_RS07980 (NYR19_07980) - 1681440..1681982 (+) 543 WP_021461818.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  NYR19_RS07985 (NYR19_07985) - 1681993..1682835 (+) 843 WP_039154196.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  NYR19_RS07990 (NYR19_07990) gorA 1682942..1684292 (+) 1351 Protein_1525 glutathione-disulfide reductase -
  NYR19_RS07995 (NYR19_07995) - 1684557..1684904 (+) 348 WP_042907350.1 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22658.31 Da        Isoelectric Point: 6.2429

>NTDB_id=625949 NYR19_RS07970 WP_039083346.1 1679674..1680282(-) (ruvA) [Gallibacterium anatis strain TH22]
MIGHLRGILLEKSPPEILLEVNGIGYEVLLPMTSFYHLPEVNMEAAIYTHLVVREDAHLLFGFYHKQDRTLFRELIKTNG
VGPKLALAILSAMSVSEFSYAIEREELSKLVKIPGVGKKTAERLIVELKGKFKAYQHDDFFIEQTTTQSGIETEKVSATD
DAISALVALGYKPAEAEKMVKRVAKPEWDSEQLIREALKSAL

Nucleotide


Download         Length: 609 bp        

>NTDB_id=625949 NYR19_RS07970 WP_039083346.1 1679674..1680282(-) (ruvA) [Gallibacterium anatis strain TH22]
ATGATTGGGCATTTACGCGGTATTTTATTGGAGAAATCGCCACCAGAAATTTTGTTGGAGGTTAACGGTATTGGTTATGA
AGTGCTATTGCCAATGACCAGTTTTTATCATTTGCCGGAAGTGAATATGGAAGCCGCCATTTATACGCATTTAGTGGTGC
GAGAAGATGCACATCTGCTATTCGGTTTCTATCATAAGCAGGATCGCACGTTATTTAGAGAATTAATCAAAACCAATGGT
GTCGGCCCTAAATTAGCGTTGGCTATTTTGTCAGCGATGTCGGTAAGCGAATTTTCTTATGCGATAGAACGTGAAGAGTT
GTCGAAGTTGGTGAAAATCCCCGGAGTGGGAAAGAAAACCGCCGAGCGTTTGATTGTTGAACTGAAAGGCAAATTTAAAG
CGTATCAGCACGATGATTTCTTTATTGAACAGACCACAACTCAAAGCGGCATTGAAACAGAGAAAGTTTCCGCAACGGAT
GACGCCATTTCTGCGTTGGTTGCATTGGGTTATAAACCGGCAGAAGCAGAAAAAATGGTGAAGCGTGTGGCAAAACCGGA
ATGGGATAGCGAACAGTTGATTCGTGAAGCTTTGAAGAGTGCCTTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(158-200)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

34.722

100

0.371
  ruvA Streptococcus pneumoniae R6

37.688

98.515

0.371
  ruvA Streptococcus pneumoniae D39

37.688

98.515

0.371
  ruvA Streptococcus pneumoniae TIGR4

37.688

98.515

0.371