Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VIBNI_RS18355 Genome accession   NC_022528
Coordinates   4063996..4065519 (-) Length   507 a.a.
NCBI ID   WP_022552154.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4058996..4070519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBNI_RS18335 (VIBNI_A3845) - 4060205..4061191 (+) 987 WP_022552151.1 serine/threonine protein kinase -
  VIBNI_RS18340 (VIBNI_A3846) - 4061215..4061817 (+) 603 WP_004406510.1 thiol:disulfide interchange protein DsbA/DsbL -
  VIBNI_RS18345 (VIBNI_A3847) - 4061882..4062766 (-) 885 WP_022552152.1 acyltransferase -
  VIBNI_RS18350 (VIBNI_A3848) - 4062978..4063952 (+) 975 WP_022552153.1 DUF2860 family protein -
  VIBNI_RS18355 (VIBNI_A3849) comM 4063996..4065519 (-) 1524 WP_022552154.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VIBNI_RS18360 (VIBNI_A3850) ilvG 4065975..4067621 (+) 1647 WP_022552155.1 acetolactate synthase 2 catalytic subunit -
  VIBNI_RS18365 (VIBNI_A3851) ilvM 4067621..4067905 (+) 285 WP_004406520.1 acetolactate synthase 2 small subunit -
  VIBNI_RS18370 (VIBNI_A3852) ilvE 4067921..4068868 (+) 948 WP_004406522.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54877.98 Da        Isoelectric Point: 7.2979

>NTDB_id=62594 VIBNI_RS18355 WP_022552154.1 4063996..4065519(-) (comM) [Vibrio nigripulchritudo]
MALAIIHSRACVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSGFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIAITKLGQTEFIGELALSGELRSVKGVLPAALAANRENHCLVVPDANGDQAALVGADVHKSAANL
LDVCADLCGQKTLGLFQTPELHFAKESSRCLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPDMSE
DEAMESASVASLTQQEINQYNWKKRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQTILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTQVVKQRVNFAREKMQARSGKVNALLGTREIDKYCPLHKQDAEFLENALHQLGLSIRAYHRIIKVARTIADLSGSPQ
IERPHIAEALGYRAMDRLMKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=62594 VIBNI_RS18355 WP_022552154.1 4063996..4065519(-) (comM) [Vibrio nigripulchritudo]
ATGGCGTTAGCGATCATTCATAGCCGGGCGTGTGTAGGAGTGGAAGCTCCAGAAGTGACGGTTGAGGTTCACATCAGCAA
CGGAATGCCAGGGTTTACGTTGGTAGGTTTGCCAGAAACAACTGTGAAAGAATCTCGAGATCGGGTTCGCAGTGCGATTA
TTAATTCAGGCTTTGAGTTTCCAGCCAAGCGAATTACGGTCAATCTGGCTCCCGCTGATTTACCGAAAGAAGGTGGAAGG
TTTGATTTACCCATAGCACTGGGTATTTTGGCGGCATCAGAGCAAATTGCCATTACCAAACTGGGTCAGACCGAGTTTAT
TGGTGAACTGGCCCTTTCGGGTGAGCTTCGGTCCGTCAAAGGCGTGTTACCAGCGGCATTAGCAGCAAACCGGGAAAATC
ATTGCTTGGTTGTGCCCGATGCCAATGGCGATCAGGCCGCCCTTGTTGGAGCGGATGTTCACAAATCCGCAGCCAACTTG
CTCGATGTATGCGCTGATTTGTGTGGGCAGAAAACATTGGGATTATTTCAAACCCCAGAACTTCATTTTGCAAAGGAATC
ATCACGATGCCTGCAAGACATCATTGGTCAGCAGCAAGGTAAGCGAGCACTAGAAATAGCCGCTGCGGGTAATCACAATT
TGCTTTTTCTTGGACCACCCGGCACGGGGAAAACCATGCTGGCGTCGCGATTGTGCGATTTGCTGCCCGACATGAGCGAA
GATGAGGCAATGGAAAGCGCGTCGGTTGCTTCTCTCACCCAACAAGAGATAAATCAGTACAACTGGAAGAAGCGTCCATT
CCGGTCCCCACATCACTCGAGTTCTATGGCAGCACTGGTTGGCGGTGGATCGATTCCTCGTCCGGGTGAAATATCTTTAG
CTCATAATGGATTACTATTTTTAGATGAGATGCCGGAGTTTGAACGAAAGGTTCTGGATTCGCTCAGAGAACCCCTGGAA
TCCGGTGAAATCATCATTTCTCGCGCCGCAGGGAAAACCCGTTTTCCTGCCCGATTCCAGTTAGTAGGGGCTTTGAACCC
TAGCCCGACGGGGTACTATGAGGGGAATCAAGCTCGAGTGAACCCTCAGACGATCCTGCGGTATTTGGGGCGACTATCAG
GGCCTTTACTTGATCGCTTTGATATGTCGTTAGAAATACCGGCACTGCCGAAAGGTACGTTATCAGAAGGTGGCGATCGC
GGAGAACCGACTCAGGTGGTGAAACAGAGGGTCAACTTTGCTCGAGAGAAAATGCAGGCTCGCAGTGGAAAAGTGAATGC
GCTACTGGGTACACGTGAAATCGACAAATACTGTCCTTTGCATAAGCAAGATGCAGAGTTTCTGGAGAACGCATTGCACC
AACTCGGGTTATCCATACGCGCTTATCATCGAATCATCAAAGTGGCACGTACCATTGCAGATTTGTCAGGAAGCCCTCAA
ATCGAGCGGCCACATATTGCTGAAGCGTTGGGTTATCGAGCGATGGACAGATTAATGAAGCAACTGACGGCTCAGGCGGT
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Glaesserella parasuis strain SC1401

63.137

100

0.635
  comM Haemophilus influenzae Rd KW20

63.314

100

0.633
  comM Legionella pneumophila str. Paris

49.899

98.028

0.489
  comM Legionella pneumophila strain ERS1305867

49.899

98.028

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.436

Multiple sequence alignment