Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LMH63_RS03660 Genome accession   NZ_CP086615
Coordinates   800021..800470 (+) Length   149 a.a.
NCBI ID   WP_109677395.1    Uniprot ID   A0A2U2N545
Organism   Spiribacter halobius strain E85     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 795021..805470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH63_RS03660 (LMH63_03660) ssb 800021..800470 (+) 450 WP_109677395.1 single-stranded DNA-binding protein Machinery gene
  LMH63_RS03665 (LMH63_03665) - 800703..801944 (+) 1242 WP_109677393.1 site-specific integrase -
  LMH63_RS03670 (LMH63_03670) - 801941..803584 (+) 1644 WP_199225613.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16467.18 Da        Isoelectric Point: 4.8334

>NTDB_id=625710 LMH63_RS03660 WP_109677395.1 800021..800470(+) (ssb) [Spiribacter halobius strain E85]
MARGVNKVILIGNLGADPEVRYSPAGSAVTNARLATTDQWRDRQTGEQQERTEWHRLVFFGRVAEVAGEYLKKGSKVYIE
GRLQTRKWQGQDGQDRYTTEVVVNDMQMLDGRGEMGGGAPRSGGQASRQPAEPEPQAGPADDFDDDIPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=625710 LMH63_RS03660 WP_109677395.1 800021..800470(+) (ssb) [Spiribacter halobius strain E85]
ATGGCGCGCGGCGTAAACAAGGTCATCCTCATCGGCAATCTGGGCGCGGACCCGGAGGTGCGCTACTCGCCGGCGGGCAG
TGCCGTGACCAACGCCCGGCTGGCCACCACGGACCAGTGGCGGGACCGGCAGACCGGCGAGCAGCAGGAGCGTACGGAAT
GGCACCGGCTGGTGTTCTTCGGGCGCGTCGCCGAAGTCGCTGGCGAGTACCTGAAGAAGGGCTCCAAGGTCTATATCGAG
GGCCGGCTGCAGACCCGCAAGTGGCAGGGCCAGGACGGCCAGGACCGCTACACCACCGAGGTGGTGGTCAATGACATGCA
GATGCTCGATGGCCGCGGCGAGATGGGCGGCGGGGCGCCCCGCAGCGGCGGCCAGGCGAGCCGCCAGCCGGCCGAGCCCG
AGCCCCAGGCCGGCCCGGCGGACGACTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U2N545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.386

100

0.678
  ssb Glaesserella parasuis strain SC1401

52.247

100

0.624
  ssb Neisseria meningitidis MC58

48.555

100

0.564
  ssb Neisseria gonorrhoeae MS11

48.555

100

0.564
  ssb Latilactobacillus sakei subsp. sakei 23K

31.395

100

0.362