Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NY025_RS14125 Genome accession   NZ_CP103852
Coordinates   1351823..1352470 (+) Length   215 a.a.
NCBI ID   WP_193027921.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain LMG 9673     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346823..1357470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY025_RS14095 (NY025_14095) - 1347007..1347660 (+) 654 WP_193034957.1 BON domain-containing protein -
  NY025_RS14100 (NY025_14100) - 1347708..1348238 (+) 531 WP_193027916.1 flavodoxin family protein -
  NY025_RS14105 (NY025_14105) - 1348287..1348649 (+) 363 WP_193027917.1 TraR/DksA family transcriptional regulator -
  NY025_RS14110 (NY025_14110) - 1348682..1349329 (+) 648 WP_193027918.1 BON domain-containing protein -
  NY025_RS14115 (NY025_14115) - 1349385..1350185 (-) 801 WP_193027919.1 helix-turn-helix domain-containing protein -
  NY025_RS14120 (NY025_14120) - 1350444..1351826 (+) 1383 WP_193034955.1 PAS domain-containing sensor histidine kinase -
  NY025_RS14125 (NY025_14125) letA 1351823..1352470 (+) 648 WP_193027921.1 response regulator transcription factor Regulator
  NY025_RS14130 (NY025_14130) - 1352575..1353063 (-) 489 WP_193027922.1 hypothetical protein -
  NY025_RS14135 (NY025_14135) - 1353302..1354339 (+) 1038 WP_193027923.1 zinc-dependent alcohol dehydrogenase family protein -
  NY025_RS14140 (NY025_14140) - 1354415..1356232 (+) 1818 WP_408005009.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23903.55 Da        Isoelectric Point: 6.2267

>NTDB_id=625705 NY025_RS14125 WP_193027921.1 1351823..1352470(+) (letA) [Ralstonia pseudosolanacearum strain LMG 9673]
MIRVMIADDHAVMRDGVRHILERAGDFEVVCEASDGTQVLQLVRDHQPQVIVLDLSMPGRSGLELLRQLHDDHPAVRVLV
LTMHAEEQYVARAFRAGAAAYLTKESAATELVTALQKVARGGTYVSPPMAEKLAHSLGEASDEAAHMRLSDREMEVYRRL
VLGEPLTEIAASLCVSAKTISTYKMRLMDKLQLSSEAALVRYAIRHRLFLDDDTL

Nucleotide


Download         Length: 648 bp        

>NTDB_id=625705 NY025_RS14125 WP_193027921.1 1351823..1352470(+) (letA) [Ralstonia pseudosolanacearum strain LMG 9673]
ATGATCCGCGTGATGATCGCCGACGATCACGCTGTCATGCGCGACGGCGTGCGCCATATCCTGGAGCGTGCCGGGGATTT
CGAGGTTGTGTGCGAAGCTTCCGACGGCACGCAGGTGTTGCAGCTGGTGCGCGACCACCAGCCACAGGTGATCGTGCTTG
ACCTGTCCATGCCGGGGCGCAGCGGGTTGGAGCTGTTACGCCAGTTGCATGACGATCATCCGGCGGTGCGTGTCCTGGTG
TTGACCATGCACGCAGAGGAGCAGTACGTGGCACGCGCCTTCCGCGCAGGAGCGGCAGCCTACCTGACCAAGGAGAGCGC
CGCGACCGAGCTGGTGACGGCGCTGCAGAAGGTCGCACGCGGCGGTACCTATGTCAGCCCTCCCATGGCCGAGAAGCTCG
CGCACAGCCTGGGCGAGGCCAGCGATGAGGCTGCACACATGCGCCTGTCCGATCGCGAGATGGAGGTCTATCGCCGGCTA
GTGCTGGGTGAGCCGCTTACGGAGATCGCCGCCAGCCTGTGTGTGAGCGCCAAGACCATCAGCACCTACAAAATGCGGTT
GATGGACAAGCTGCAGTTGTCCAGCGAGGCTGCACTCGTGCGCTATGCCATACGTCATCGGTTGTTCTTGGATGACGACA
CCCTGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

39.524

97.674

0.386
  letA Legionella pneumophila strain ERS1305867

39.524

97.674

0.386