Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LMK00_RS02340 Genome accession   NZ_CP086395
Coordinates   482432..483436 (+) Length   334 a.a.
NCBI ID   WP_252175628.1    Uniprot ID   A0A9Q8Y309
Organism   Lactococcus formosensis strain I4/6O     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 477432..488436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMK00_RS02320 (LMK00_02320) - 477816..478520 (+) 705 WP_096368588.1 Bax inhibitor-1/YccA family protein -
  LMK00_RS02325 (LMK00_02325) - 478570..479394 (-) 825 WP_165711384.1 HAD family hydrolase -
  LMK00_RS02330 (LMK00_02330) - 479757..481178 (+) 1422 WP_017368901.1 NCS2 family permease -
  LMK00_RS02335 (LMK00_02335) - 481256..482356 (+) 1101 WP_252175627.1 YdcF family protein -
  LMK00_RS02340 (LMK00_02340) coiA 482432..483436 (+) 1005 WP_252175628.1 competence protein CoiA family protein Machinery gene
  LMK00_RS02345 (LMK00_02345) pepF 483420..485225 (+) 1806 WP_252175629.1 oligoendopeptidase F Regulator
  LMK00_RS02350 (LMK00_02350) - 485225..485908 (+) 684 WP_096368583.1 O-methyltransferase -
  LMK00_RS02355 (LMK00_02355) - 486006..486914 (+) 909 WP_017368906.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 40122.06 Da        Isoelectric Point: 8.4049

>NTDB_id=624742 LMK00_RS02340 WP_252175628.1 482432..483436(+) (coiA) [Lactococcus formosensis strain I4/6O]
MLNALDKDGNTINLFDNKPINPPFYCPACKSSLRLKRGKIKIPHFAHISLQNCDSWSESESAQHLGLKLSLYQWLKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKKTLSSLQKNLLYYSVERGF
YFWELDWDRKKLRLKSLIHQDLKGRLICLTEEFDFFQESLLELLRQPFLKGENLSIDVPEQEELQSFIQKQLYYQVPKWI
KVQEKYYEQDKNLLDLNWKKCYWAPPGLNLLTFDFINERRESFFQVDTSLEKYYQGFYERFQSQEHERLHTPSYYAIIKD
KNKVKNGEWHGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=624742 LMK00_RS02340 WP_252175628.1 482432..483436(+) (coiA) [Lactococcus formosensis strain I4/6O]
ATGTTGAATGCATTGGATAAAGACGGAAATACAATTAATCTCTTTGATAATAAACCCATTAATCCCCCTTTTTATTGCCC
AGCTTGCAAGTCGTCCCTGCGTTTAAAAAGAGGAAAGATAAAAATACCTCACTTTGCGCACATATCTTTACAAAATTGTG
ATTCTTGGAGTGAAAGCGAATCTGCACAACATCTGGGTTTAAAACTTAGCTTATACCAATGGCTTAAGGAAAAAGAGAAA
GTAGAGCTAGAAAAATATGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCCATCGAAATACA
GTGTTCGCCACTCTCTTTACAACGTTTAGAAGAGAGAACGGTAAGCTACAAAGAAAAGGGATATTATGTACTTTGGCTTC
AAGGAAGGGATTTGTGGCTCAAGAAGACCTTATCATCGCTACAGAAAAATTTGCTCTATTATTCAGTAGAGCGAGGTTTT
TACTTTTGGGAGTTAGATTGGGACAGAAAGAAGCTACGTTTAAAATCATTGATTCATCAGGATTTAAAAGGTCGACTGAT
ATGTCTTACGGAAGAGTTTGATTTTTTCCAAGAGAGTCTCTTAGAACTCTTACGTCAGCCTTTTCTCAAAGGAGAAAATC
TTAGTATAGATGTACCAGAGCAAGAAGAGTTACAGTCTTTTATTCAAAAACAACTGTATTATCAAGTGCCAAAATGGATT
AAAGTGCAAGAAAAATATTATGAACAGGATAAAAATTTGTTAGATCTCAACTGGAAGAAATGTTACTGGGCACCTCCAGG
ACTAAACTTATTGACCTTTGACTTTATAAACGAAAGAAGAGAAAGTTTTTTTCAAGTGGATACTTCCTTAGAAAAATATT
ATCAAGGCTTCTACGAAAGGTTTCAGTCACAAGAACATGAAAGACTGCATACACCAAGCTACTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGCATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.829

98.204

0.509
  coiA Streptococcus pneumoniae Rx1

41.463

98.204

0.407
  coiA Streptococcus pneumoniae D39

41.463

98.204

0.407
  coiA Streptococcus pneumoniae R6

41.463

98.204

0.407
  coiA Streptococcus pneumoniae TIGR4

41.159

98.204

0.404
  coiA Streptococcus mitis NCTC 12261

40.854

98.204

0.401