Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LMK00_RS02345 Genome accession   NZ_CP086395
Coordinates   483420..485225 (+) Length   601 a.a.
NCBI ID   WP_252175629.1    Uniprot ID   -
Organism   Lactococcus formosensis strain I4/6O     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 478420..490225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMK00_RS02325 (LMK00_02325) - 478570..479394 (-) 825 WP_165711384.1 HAD family hydrolase -
  LMK00_RS02330 (LMK00_02330) - 479757..481178 (+) 1422 WP_017368901.1 NCS2 family permease -
  LMK00_RS02335 (LMK00_02335) - 481256..482356 (+) 1101 WP_252175627.1 YdcF family protein -
  LMK00_RS02340 (LMK00_02340) coiA 482432..483436 (+) 1005 WP_252175628.1 competence protein CoiA family protein Machinery gene
  LMK00_RS02345 (LMK00_02345) pepF 483420..485225 (+) 1806 WP_252175629.1 oligoendopeptidase F Regulator
  LMK00_RS02350 (LMK00_02350) - 485225..485908 (+) 684 WP_096368583.1 O-methyltransferase -
  LMK00_RS02355 (LMK00_02355) - 486006..486914 (+) 909 WP_017368906.1 peptidyl-prolyl cis-trans isomerase -
  LMK00_RS02360 (LMK00_02360) alaS 487162..489780 (+) 2619 WP_213495448.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69798.25 Da        Isoelectric Point: 4.5830

>NTDB_id=624743 LMK00_RS02345 WP_252175629.1 483420..485225(+) (pepF) [Lactococcus formosensis strain I4/6O]
MAKKRDEIAENLTWDLSTVFENDAAWELELKSVSEKLETVNRYEGHLLESAQSLLEITEVELEISRAVEKVYVYASMKHD
QDTQVSRYQEYEARATNLYAKFGEMFAFYEPEFLALTPERYESFRREVPKLEQYSHMFERLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKDRHVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKTRGYDSARQAALSSNFIPEEVYDRLLESVNKYLPLLHRYIKLREQILGLDDDLKMYDVYTPLSDLDYKFNYPEAV
EKAEEVLQVFGPEYAAHVKKAFDERWIDVAENIGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAETTDEKERFAILNHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAGLNEKYYGLPALENPEIQYEWARIPHFYYNYYVFQYATGFAAATYLAEAIVNGGSEAREKYLTYLKAGSSDYP
LAVIAQAGVDMEEITYLESAFAVFEKRLIELENLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=624743 LMK00_RS02345 WP_252175629.1 483420..485225(+) (pepF) [Lactococcus formosensis strain I4/6O]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACCGTATTTGAAAATGATGCCGCCTGGGA
ACTTGAACTTAAAAGTGTCTCGGAAAAGTTAGAGACCGTAAACCGCTACGAAGGACATCTTTTAGAGAGTGCTCAAAGCT
TATTAGAAATCACGGAAGTTGAGCTAGAGATTTCGCGCGCTGTGGAAAAAGTTTATGTCTATGCTTCAATGAAGCATGAT
CAAGATACACAAGTGAGTCGTTACCAAGAATATGAAGCTAGAGCTACAAATTTATATGCTAAGTTTGGTGAAATGTTTGC
CTTTTATGAGCCGGAATTTTTAGCTTTAACGCCAGAACGTTATGAGAGTTTTAGAAGAGAAGTGCCTAAGTTGGAACAGT
ATTCTCATATGTTTGAACGCCTTTTTGCTAAAAAAGAGCATATTTTAAGTCCAAAAGAGGAAAAACTGTTAGCCAGTGCC
AGTGAGATTTTTGGTGCAGCTGCCGAAACTTTCGAAATTTTTGACAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACATGGTAATTATATCTCGCTCATGGAAAGTAAGGACCGTCATGTGCGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAGCACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAGACACGTGGGTATGATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAGGCTTTTGGAGTCGGTTAATAAATATTTGCCTCTTTTACATCGCTATATTAAATTACGCGAGCAAATTTTAGGTT
TAGATGATGATTTGAAGATGTATGATGTCTACACACCCTTATCTGACTTGGATTATAAGTTTAACTATCCAGAAGCAGTA
GAGAAAGCAGAAGAAGTTCTTCAAGTTTTCGGCCCTGAGTATGCAGCACATGTTAAAAAAGCTTTTGATGAGCGTTGGAT
TGATGTAGCAGAAAATATTGGCAAACGTTCTGGCGCATACTCGGGAGGATGCTATGATACAAATGCCTTTATGCTCTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTTACCTTAGTTCATGAAATGGGACACAGTATGCATTCTACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGATTATCCAATCTTTCTTGCAGAAATTGCCTCAACAACCAATGAAAATATCTTGACGGA
AAGTTTACTTGCGGAGACGACAGATGAAAAAGAGCGTTTTGCCATTTTAAACCACTGGCTTGATGGCTTCCGGGGAACCG
TTTTTCGTCAAAGCCAATTTGCTGAATTTGAACATGAAATTCATAAAGCTGATCAAGAAGGAAAGGTCTTGACCAGTGAA
TTCATGAACCAGCTCTACGCAGGTCTTAATGAGAAGTATTATGGTTTGCCTGCTCTAGAAAATCCTGAAATTCAGTACGA
GTGGGCACGCATTCCACATTTTTATTATAATTATTATGTTTTCCAATATGCAACAGGCTTTGCCGCAGCAACTTATCTTG
CAGAGGCTATCGTAAATGGTGGATCAGAAGCGCGTGAAAAATACCTCACTTATCTCAAAGCTGGATCAAGTGATTATCCG
CTGGCTGTGATTGCTCAAGCAGGTGTAGATATGGAAGAAATAACGTATTTAGAATCGGCTTTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTGGAAAATTTAGTCGAAAAAGGAGTCCATTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-582)

Oligopeptidase F (Peptidase_M3_N)

(112-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.892

100

0.649