Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | LMT64_RS06820 | Genome accession | NZ_CP086380 |
| Coordinates | 1355859..1356929 (+) | Length | 356 a.a. |
| NCBI ID | WP_126351482.1 | Uniprot ID | A0A431W0I9 |
| Organism | Deinococcus radiophilus strain ATCC 27603 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1356960..1399756 | 1355859..1356929 | flank | 31 |
Gene organization within MGE regions
Location: 1355859..1399756
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMT64_RS06820 (LMT64_06820) | comM | 1355859..1356929 (+) | 1071 | WP_126351482.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| LMT64_RS06825 (LMT64_06825) | - | 1356960..1358441 (-) | 1482 | WP_126351483.1 | recombinase family protein | - |
| LMT64_RS06830 (LMT64_06830) | - | 1358793..1359752 (-) | 960 | WP_126351485.1 | hypothetical protein | - |
| LMT64_RS06835 (LMT64_06835) | - | 1359813..1360484 (-) | 672 | WP_126351486.1 | HNH endonuclease | - |
| LMT64_RS06840 (LMT64_06840) | - | 1360528..1361343 (-) | 816 | WP_126351487.1 | excalibur calcium-binding domain-containing protein | - |
| LMT64_RS06845 (LMT64_06845) | - | 1361376..1361819 (-) | 444 | WP_229253097.1 | hypothetical protein | - |
| LMT64_RS06850 (LMT64_06850) | - | 1361871..1362329 (-) | 459 | WP_229253098.1 | S24 family peptidase | - |
| LMT64_RS06855 (LMT64_06855) | - | 1362349..1363017 (-) | 669 | WP_170165931.1 | helix-turn-helix domain-containing protein | - |
| LMT64_RS06860 (LMT64_06860) | - | 1363142..1363402 (+) | 261 | WP_126351491.1 | helix-turn-helix transcriptional regulator | - |
| LMT64_RS06865 (LMT64_06865) | - | 1363392..1363646 (+) | 255 | WP_126351492.1 | hypothetical protein | - |
| LMT64_RS06870 (LMT64_06870) | - | 1363711..1364139 (+) | 429 | WP_126351493.1 | hypothetical protein | - |
| LMT64_RS06875 (LMT64_06875) | - | 1364136..1364372 (+) | 237 | WP_126351494.1 | hypothetical protein | - |
| LMT64_RS06880 (LMT64_06880) | - | 1364372..1364584 (+) | 213 | WP_126351495.1 | hypothetical protein | - |
| LMT64_RS06885 (LMT64_06885) | - | 1364581..1364754 (+) | 174 | WP_170165932.1 | hypothetical protein | - |
| LMT64_RS06890 (LMT64_06890) | - | 1364754..1364966 (+) | 213 | WP_148103221.1 | hypothetical protein | - |
| LMT64_RS06895 (LMT64_06895) | - | 1364963..1365121 (+) | 159 | WP_170165933.1 | hypothetical protein | - |
| LMT64_RS06900 (LMT64_06900) | - | 1365118..1365843 (+) | 726 | WP_170165934.1 | BRO family protein | - |
| LMT64_RS06905 (LMT64_06905) | - | 1365840..1366835 (+) | 996 | WP_126351498.1 | helix-turn-helix domain-containing protein | - |
| LMT64_RS06910 (LMT64_06910) | - | 1366828..1367643 (+) | 816 | WP_126351499.1 | ATP-binding protein | - |
| LMT64_RS06915 (LMT64_06915) | - | 1367694..1368032 (+) | 339 | WP_126351500.1 | hypothetical protein | - |
| LMT64_RS06920 (LMT64_06920) | - | 1368029..1368313 (+) | 285 | WP_126351501.1 | hypothetical protein | - |
| LMT64_RS06925 (LMT64_06925) | - | 1368310..1368588 (+) | 279 | WP_126351502.1 | hypothetical protein | - |
| LMT64_RS06930 (LMT64_06930) | - | 1368776..1369189 (+) | 414 | WP_126351503.1 | hypothetical protein | - |
| LMT64_RS06935 (LMT64_06935) | - | 1369186..1369416 (+) | 231 | WP_170165935.1 | hypothetical protein | - |
| LMT64_RS06940 (LMT64_06940) | - | 1369413..1369616 (+) | 204 | WP_229253099.1 | hypothetical protein | - |
| LMT64_RS06945 (LMT64_06945) | - | 1369613..1369915 (+) | 303 | WP_126351505.1 | hypothetical protein | - |
| LMT64_RS06950 (LMT64_06950) | - | 1369946..1370818 (+) | 873 | WP_126351506.1 | hypothetical protein | - |
| LMT64_RS06960 (LMT64_06960) | - | 1371138..1371404 (-) | 267 | WP_126351507.1 | hypothetical protein | - |
| LMT64_RS06965 (LMT64_06965) | - | 1371401..1372003 (-) | 603 | WP_229253100.1 | hypothetical protein | - |
| LMT64_RS06970 (LMT64_06970) | - | 1371887..1372381 (+) | 495 | WP_229253450.1 | terminase small subunit | - |
| LMT64_RS06975 (LMT64_06975) | - | 1372381..1373688 (+) | 1308 | WP_126351509.1 | PBSX family phage terminase large subunit | - |
| LMT64_RS06980 (LMT64_06980) | - | 1373742..1375067 (+) | 1326 | WP_229253101.1 | hypothetical protein | - |
| LMT64_RS06985 (LMT64_06985) | - | 1375064..1376383 (+) | 1320 | WP_126351511.1 | S49 family peptidase | - |
| LMT64_RS06990 (LMT64_06990) | - | 1376394..1376768 (+) | 375 | WP_229253102.1 | hypothetical protein | - |
| LMT64_RS06995 (LMT64_06995) | - | 1376850..1378064 (+) | 1215 | WP_126351513.1 | hypothetical protein | - |
| LMT64_RS07000 (LMT64_07000) | - | 1378117..1378503 (+) | 387 | WP_126351514.1 | hypothetical protein | - |
| LMT64_RS07005 (LMT64_07005) | - | 1378515..1378943 (+) | 429 | WP_126351515.1 | DUF4054 domain-containing protein | - |
| LMT64_RS07010 (LMT64_07010) | - | 1378940..1379356 (+) | 417 | WP_126351516.1 | hypothetical protein | - |
| LMT64_RS07015 (LMT64_07015) | - | 1379349..1379735 (+) | 387 | WP_126351517.1 | hypothetical protein | - |
| LMT64_RS07020 (LMT64_07020) | - | 1379732..1380007 (+) | 276 | WP_126351518.1 | hypothetical protein | - |
| LMT64_RS07025 (LMT64_07025) | - | 1380004..1380393 (+) | 390 | WP_126351519.1 | hypothetical protein | - |
| LMT64_RS07030 (LMT64_07030) | - | 1380390..1380611 (+) | 222 | WP_126351520.1 | hypothetical protein | - |
| LMT64_RS07035 (LMT64_07035) | - | 1380614..1381102 (+) | 489 | WP_126351521.1 | hypothetical protein | - |
| LMT64_RS07040 (LMT64_07040) | - | 1381319..1381624 (+) | 306 | WP_126351522.1 | hypothetical protein | - |
| LMT64_RS07045 (LMT64_07045) | - | 1381654..1382133 (+) | 480 | WP_126351523.1 | hypothetical protein | - |
| LMT64_RS07050 (LMT64_07050) | - | 1382130..1382576 (+) | 447 | WP_126351524.1 | hypothetical protein | - |
| LMT64_RS07055 (LMT64_07055) | - | 1382642..1388959 (+) | 6318 | WP_229253103.1 | phage tail tape measure protein | - |
| LMT64_RS07060 (LMT64_07060) | - | 1388956..1390542 (+) | 1587 | WP_126351526.1 | hypothetical protein | - |
| LMT64_RS07065 (LMT64_07065) | - | 1390539..1390979 (+) | 441 | WP_126351527.1 | hypothetical protein | - |
| LMT64_RS07070 (LMT64_07070) | - | 1390976..1393843 (+) | 2868 | WP_229253104.1 | hypothetical protein | - |
| LMT64_RS07075 (LMT64_07075) | - | 1393840..1394307 (-) | 468 | WP_126351529.1 | hypothetical protein | - |
| LMT64_RS07080 (LMT64_07080) | - | 1394325..1395245 (-) | 921 | WP_229253105.1 | O-antigen ligase | - |
| LMT64_RS07085 (LMT64_07085) | - | 1395483..1396565 (+) | 1083 | WP_126351531.1 | D-glucuronyl C5-epimerase family protein | - |
| LMT64_RS07090 (LMT64_07090) | - | 1396678..1397073 (+) | 396 | WP_126351532.1 | hypothetical protein | - |
| LMT64_RS07095 (LMT64_07095) | - | 1397086..1397565 (+) | 480 | WP_126351533.1 | hypothetical protein | - |
| LMT64_RS07100 (LMT64_07100) | - | 1397522..1398064 (+) | 543 | WP_126351534.1 | hypothetical protein | - |
| LMT64_RS07105 (LMT64_07105) | - | 1398051..1398950 (+) | 900 | WP_126351535.1 | glycoside hydrolase family 19 protein | - |
| LMT64_RS07110 (LMT64_07110) | - | 1399061..1399756 (+) | 696 | WP_126351536.1 | thermonuclease family protein | - |
Sequence
Protein
Download Length: 356 a.a. Molecular weight: 36724.46 Da Isoelectric Point: 6.2438
>NTDB_id=624659 LMT64_RS06820 WP_126351482.1 1355859..1356929(+) (comM) [Deinococcus radiophilus strain ATCC 27603]
MLARVRSAALIGVDAVPVEVEVDVSPGLPSFMVVGLPDQAVSEARERVRAAVRNSGLPFPAARITVNLAPADLRKEGPLY
DLPIALGVLAAQELLPLTALREVLCAGELALDGSLRPVAGGVNLALLGADLNLPVLVPAGNAAEAALIEVPVYGAGTLLD
AMRHLSGQAILPQTPASVPARDPTAAPDLADVKGQAAAKRALEIAVAGGHNLLMVGSPGSGKTMLARRAAGLLPPLTRAE
ALEVIRIHSAAGLLTRGMGLSGTPPYRSPHHTVSDAGLIGGGSVPRPGEVSLAHRGVLFLDEFPEFSRKALETLRQPLED
GRVTISRARASVEYPANFQLIAAMNPCPCADQSNDA
MLARVRSAALIGVDAVPVEVEVDVSPGLPSFMVVGLPDQAVSEARERVRAAVRNSGLPFPAARITVNLAPADLRKEGPLY
DLPIALGVLAAQELLPLTALREVLCAGELALDGSLRPVAGGVNLALLGADLNLPVLVPAGNAAEAALIEVPVYGAGTLLD
AMRHLSGQAILPQTPASVPARDPTAAPDLADVKGQAAAKRALEIAVAGGHNLLMVGSPGSGKTMLARRAAGLLPPLTRAE
ALEVIRIHSAAGLLTRGMGLSGTPPYRSPHHTVSDAGLIGGGSVPRPGEVSLAHRGVLFLDEFPEFSRKALETLRQPLED
GRVTISRARASVEYPANFQLIAAMNPCPCADQSNDA
Nucleotide
Download Length: 1071 bp
>NTDB_id=624659 LMT64_RS06820 WP_126351482.1 1355859..1356929(+) (comM) [Deinococcus radiophilus strain ATCC 27603]
GTGTTAGCCCGTGTTCGCAGCGCCGCCTTGATCGGGGTAGATGCGGTGCCCGTTGAGGTTGAGGTGGATGTCTCGCCAGG
TCTGCCGTCTTTTATGGTGGTGGGCCTGCCGGATCAGGCGGTCAGTGAGGCACGCGAGCGGGTGCGGGCAGCCGTCCGCA
ATTCAGGCCTGCCCTTTCCGGCGGCACGGATTACCGTCAACCTGGCCCCAGCAGACCTGCGTAAAGAAGGCCCGCTCTAC
GACCTGCCGATTGCGCTGGGCGTCCTGGCCGCGCAGGAGTTGCTGCCCCTGACGGCGCTGCGTGAAGTCCTCTGCGCAGG
CGAACTGGCGCTGGACGGTTCCCTGCGCCCAGTGGCGGGGGGGGTGAATCTGGCCCTGTTGGGAGCAGACCTGAACCTGC
CGGTGCTGGTTCCCGCAGGCAACGCTGCCGAGGCCGCCTTGATTGAGGTTCCAGTGTACGGGGCGGGGACGTTGCTGGAC
GCCATGCGTCACCTAAGCGGACAGGCCATCTTGCCTCAGACACCAGCCTCAGTCCCTGCACGGGACCCCACTGCCGCTCC
CGACCTGGCCGATGTCAAGGGTCAGGCGGCCGCCAAACGGGCGCTTGAAATTGCCGTTGCGGGCGGCCATAACTTATTGA
TGGTCGGCAGCCCCGGCAGCGGCAAGACGATGCTGGCCCGCCGCGCCGCAGGACTGCTGCCCCCGCTGACCCGCGCAGAG
GCACTGGAAGTGATCCGCATCCACTCGGCGGCGGGGCTGCTGACGCGCGGCATGGGCCTCAGCGGAACGCCACCTTACCG
CAGCCCCCACCACACCGTTTCGGACGCAGGCCTGATCGGCGGCGGCAGTGTACCCCGGCCGGGCGAGGTCAGCCTGGCGC
ACCGGGGCGTGCTGTTTCTGGACGAATTTCCGGAGTTCTCACGCAAGGCCCTGGAGACCCTCCGTCAACCTCTGGAAGAT
GGGCGAGTCACGATCTCACGCGCCCGCGCCTCGGTGGAATACCCAGCCAACTTTCAGCTGATCGCCGCCATGAATCCTTG
CCCCTGTGCAGATCAATCCAACGACGCCTAG
GTGTTAGCCCGTGTTCGCAGCGCCGCCTTGATCGGGGTAGATGCGGTGCCCGTTGAGGTTGAGGTGGATGTCTCGCCAGG
TCTGCCGTCTTTTATGGTGGTGGGCCTGCCGGATCAGGCGGTCAGTGAGGCACGCGAGCGGGTGCGGGCAGCCGTCCGCA
ATTCAGGCCTGCCCTTTCCGGCGGCACGGATTACCGTCAACCTGGCCCCAGCAGACCTGCGTAAAGAAGGCCCGCTCTAC
GACCTGCCGATTGCGCTGGGCGTCCTGGCCGCGCAGGAGTTGCTGCCCCTGACGGCGCTGCGTGAAGTCCTCTGCGCAGG
CGAACTGGCGCTGGACGGTTCCCTGCGCCCAGTGGCGGGGGGGGTGAATCTGGCCCTGTTGGGAGCAGACCTGAACCTGC
CGGTGCTGGTTCCCGCAGGCAACGCTGCCGAGGCCGCCTTGATTGAGGTTCCAGTGTACGGGGCGGGGACGTTGCTGGAC
GCCATGCGTCACCTAAGCGGACAGGCCATCTTGCCTCAGACACCAGCCTCAGTCCCTGCACGGGACCCCACTGCCGCTCC
CGACCTGGCCGATGTCAAGGGTCAGGCGGCCGCCAAACGGGCGCTTGAAATTGCCGTTGCGGGCGGCCATAACTTATTGA
TGGTCGGCAGCCCCGGCAGCGGCAAGACGATGCTGGCCCGCCGCGCCGCAGGACTGCTGCCCCCGCTGACCCGCGCAGAG
GCACTGGAAGTGATCCGCATCCACTCGGCGGCGGGGCTGCTGACGCGCGGCATGGGCCTCAGCGGAACGCCACCTTACCG
CAGCCCCCACCACACCGTTTCGGACGCAGGCCTGATCGGCGGCGGCAGTGTACCCCGGCCGGGCGAGGTCAGCCTGGCGC
ACCGGGGCGTGCTGTTTCTGGACGAATTTCCGGAGTTCTCACGCAAGGCCCTGGAGACCCTCCGTCAACCTCTGGAAGAT
GGGCGAGTCACGATCTCACGCGCCCGCGCCTCGGTGGAATACCCAGCCAACTTTCAGCTGATCGCCGCCATGAATCCTTG
CCCCTGTGCAGATCAATCCAACGACGCCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Legionella pneumophila str. Paris |
49.438 |
100 |
0.494 |
| comM | Legionella pneumophila strain ERS1305867 |
49.438 |
100 |
0.494 |
| comM | Vibrio campbellii strain DS40M4 |
49.003 |
98.596 |
0.483 |
| comM | Vibrio cholerae strain A1552 |
49.143 |
98.315 |
0.483 |
| comM | Glaesserella parasuis strain SC1401 |
48.305 |
99.438 |
0.48 |
| comM | Haemophilus influenzae Rd KW20 |
47.765 |
100 |
0.48 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
47.339 |
100 |
0.475 |