Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KT882_RS06010 Genome accession   NZ_CP086370
Coordinates   1382225..1383745 (-) Length   506 a.a.
NCBI ID   WP_161075316.1    Uniprot ID   A0A7X4KQ72
Organism   Pseudoduganella aquatica strain HC52     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1377225..1388745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KT882_RS06000 - 1381242..1381586 (-) 345 WP_161075314.1 DUF1840 domain-containing protein -
  KT882_RS06005 - 1381647..1382183 (-) 537 WP_161075315.1 hypothetical protein -
  KT882_RS06010 comM 1382225..1383745 (-) 1521 WP_161075316.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KT882_RS06015 - 1383944..1384816 (+) 873 WP_161075317.1 hypothetical protein -
  KT882_RS06020 - 1384827..1386647 (+) 1821 WP_228894954.1 adenylate/guanylate cyclase domain-containing protein -
  KT882_RS06025 - 1386663..1386905 (-) 243 WP_161075319.1 accessory factor UbiK family protein -
  KT882_RS06030 - 1387146..1387904 (+) 759 WP_161075320.1 TorF family putative porin -
  KT882_RS06035 - 1387917..1388255 (+) 339 WP_056398174.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54331.32 Da        Isoelectric Point: 8.2206

>NTDB_id=624553 KT882_RS06010 WP_161075316.1 1382225..1383745(-) (comM) [Pseudoduganella aquatica strain HC52]
MSLAVLRSRALAGMEAPEVSVEVHLANGLPAFAMVGLPETEVKEARDRVRAAIQNAGFEMPAQRITVNLAPADLPKESGR
FDLPIALGILAASGQIPTTPLRDYEFAGELSLSGELRPIRGALAMTYAMHRSARSKRRAFILPLANADEAALVGDALIYP
ATSLTQVCAHFAHRGDGSGALQRHQPAAPALAPDYPDLSDVKGQAGVKRALEVAAAGCHSVLLVGPPGTGKSMLAARFPG
LLPAMTDEEALEAAAVQSLSGNFDAGSWKARPFRAPHHTSSGVALVGGGSVPHPGEISMAHRGVLFLDELPEFDRRVLEV
LREPMESGKVTISRAAHRADFPARFQLLAAMNGCPCGYHGHPSGKCHCPPDVILRYQGRISGPLLDRMDLLISVQPLSPD
ELEAPANGETSAVVAARVQQAWSIQQARQGKTNQLMGTRDIERHCKLDREGRAVLRDSMLKLHWSARAYHRVLRMARTVA
DLDHSSAITAHHVSQAIQFRRALLDM

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=624553 KT882_RS06010 WP_161075316.1 1382225..1383745(-) (comM) [Pseudoduganella aquatica strain HC52]
ATGAGTCTCGCCGTACTGAGAAGCCGCGCGCTGGCGGGCATGGAGGCGCCCGAAGTCAGCGTCGAAGTCCACCTGGCGAA
CGGCTTGCCCGCCTTCGCCATGGTGGGTTTGCCGGAAACCGAAGTGAAGGAGGCGCGCGACCGGGTGCGCGCGGCGATCC
AGAACGCCGGCTTCGAGATGCCGGCCCAGCGCATCACCGTCAATCTGGCCCCGGCCGACCTGCCCAAGGAATCGGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTGGCCGCGTCCGGCCAAATTCCCACTACGCCTCTACGCGACTATGAATTCGC
CGGCGAGCTGTCGCTGTCGGGCGAGCTGCGGCCGATACGCGGTGCCCTGGCCATGACCTACGCCATGCACCGCAGCGCCC
GCAGCAAGCGGCGCGCCTTCATCTTGCCGCTGGCCAACGCCGACGAGGCGGCGCTGGTAGGCGATGCGCTGATCTACCCG
GCCACGTCGCTCACGCAGGTGTGCGCCCACTTCGCCCACCGGGGCGACGGCAGCGGTGCACTGCAGCGCCACCAGCCTGC
CGCGCCAGCACTGGCGCCGGATTATCCGGACCTGTCCGACGTCAAAGGCCAGGCCGGCGTCAAGCGCGCGCTGGAAGTGG
CGGCGGCCGGCTGCCACAGCGTGCTGCTGGTCGGTCCGCCGGGCACAGGCAAAAGCATGCTGGCCGCGCGCTTCCCCGGC
CTGCTGCCCGCCATGACGGATGAAGAGGCGCTGGAAGCGGCGGCGGTGCAATCGCTCAGCGGCAATTTCGATGCCGGCAG
CTGGAAGGCTCGTCCATTTCGTGCTCCTCACCATACCTCGTCCGGCGTGGCGCTGGTAGGCGGCGGCAGCGTGCCCCATC
CGGGAGAAATTTCCATGGCGCACAGGGGCGTGCTGTTTCTCGACGAGCTGCCCGAATTCGACCGGCGCGTACTGGAAGTG
CTGCGCGAGCCGATGGAATCGGGCAAGGTCACCATCTCCCGCGCCGCCCACCGCGCCGACTTCCCGGCCCGCTTCCAGCT
GCTGGCGGCCATGAATGGCTGCCCCTGCGGCTACCACGGCCATCCCAGCGGAAAATGCCACTGCCCGCCGGACGTCATCC
TGCGCTACCAGGGCAGGATATCGGGGCCGCTGCTGGACCGCATGGATCTGCTGATCTCGGTCCAGCCGCTCTCTCCGGAC
GAACTCGAAGCGCCGGCGAACGGCGAAACCTCGGCCGTGGTGGCCGCGCGCGTGCAGCAAGCCTGGAGTATCCAGCAGGC
CCGCCAGGGCAAAACCAATCAGCTGATGGGCACGCGGGACATCGAACGGCACTGCAAGCTGGACCGCGAAGGCCGGGCCG
TGCTGCGCGACAGCATGCTCAAGCTGCACTGGTCGGCGCGCGCCTATCACCGCGTGCTGCGGATGGCGCGCACCGTTGCC
GACCTGGACCATTCCTCCGCCATCACGGCCCACCACGTCAGCCAGGCCATCCAGTTCCGCCGCGCCCTGCTCGATATGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4KQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.28

99.407

0.53
  comM Vibrio cholerae strain A1552

51.195

99.209

0.508
  comM Glaesserella parasuis strain SC1401

49.802

99.605

0.496
  comM Haemophilus influenzae Rd KW20

49.901

99.407

0.496
  comM Legionella pneumophila str. Paris

49.31

100

0.494
  comM Legionella pneumophila strain ERS1305867

49.31

100

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.976

98.419

0.433