Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KM317_RS01965 Genome accession   NZ_CP086333
Coordinates   447076..448596 (-) Length   506 a.a.
NCBI ID   WP_053836507.1    Uniprot ID   A0A0K3A1U7
Organism   Xanthomonas translucens pv. arrhenatheri strain LMG 727     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 442076..453596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM317_RS01935 (KM317_01935) - 442704..443351 (-) 648 WP_053835930.1 hypothetical protein -
  KM317_RS01940 (KM317_01940) - 443361..443627 (-) 267 WP_053835929.1 hypothetical protein -
  KM317_RS01945 (KM317_01945) - 443630..443848 (-) 219 WP_053835928.1 hypothetical protein -
  KM317_RS01950 (KM317_01950) - 444072..445207 (+) 1136 WP_155742827.1 IS3 family transposase -
  KM317_RS01955 (KM317_01955) - 445217..445765 (+) 549 WP_231108240.1 lipocalin family protein -
  KM317_RS01960 (KM317_01960) - 445825..446913 (+) 1089 WP_196765035.1 carotenoid 1,2-hydratase -
  KM317_RS01965 (KM317_01965) comM 447076..448596 (-) 1521 WP_053836507.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KM317_RS01970 (KM317_01970) ubiK 448610..448879 (-) 270 WP_053836506.1 ubiquinone biosynthesis accessory factor UbiK -
  KM317_RS01975 (KM317_01975) - 449056..449394 (+) 339 WP_003480503.1 P-II family nitrogen regulator -
  KM317_RS01980 (KM317_01980) - 449793..451769 (+) 1977 Protein_390 beta-N-acetylglucosaminidase domain-containing protein -
  KM317_RS01985 (KM317_01985) - 451934..452170 (-) 237 WP_053836505.1 hypothetical protein -
  KM317_RS01990 (KM317_01990) - 452174..452479 (-) 306 WP_155742835.1 hypothetical protein -
  KM317_RS01995 (KM317_01995) speE 452585..453436 (-) 852 WP_053836503.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53573.30 Da        Isoelectric Point: 8.6023

>NTDB_id=624350 KM317_RS01965 WP_053836507.1 447076..448596(-) (comM) [Xanthomonas translucens pv. arrhenatheri strain LMG 727]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYEFPARRITVNLAPADLPKDGGR
FDLPIALGILAAAGQLDPQALGNYEFLGELALTGELRAVDGVLPAALAAAQAGRTLIVPAGNGPEAALAQHVQAFTARTL
LEVCALLNGTKTLPAAEALPAAVTPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPETSEAE
ALEAAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHRGVLFLDELPEWNRHALEVLREPLESG
TVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDASGRCRCSDDSIRRYRARISGPLLDRIDLHVDVPRLPPQALRADAAP
GESSAAVRARVELARQRQLARAGCPNGQLGHSETLRDCRLQPRDEALLEHAIDRLRLSARSLHRILRVARTIADLAGSDA
IATAHLTEAIGYRHLDRGEAPLARSA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=624350 KM317_RS01965 WP_053836507.1 447076..448596(-) (comM) [Xanthomonas translucens pv. arrhenatheri strain LMG 727]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCTCCTCCGGTTCGGGTCGAAGTCCATCTGTCCGG
CGGACTGCCGGCCACGCAGATCGTCGGCCTGCCCGAAGCGGCGGTGCGCGAATCGCGCGACCGGGTACGCGCCGCCATCC
TGTGCGCGCAATACGAATTCCCGGCGCGGCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCCGCCGCCGGGCAACTCGACCCGCAGGCGCTGGGCAACTACGAATTCCT
CGGCGAACTGGCCTTGACCGGCGAACTGCGCGCCGTGGACGGGGTGCTGCCGGCGGCGCTGGCCGCCGCGCAAGCCGGGC
GCACGCTGATCGTGCCCGCCGGTAACGGCCCCGAAGCGGCGCTGGCGCAGCACGTGCAGGCGTTCACCGCGCGCACCCTG
CTCGAAGTCTGCGCACTGTTGAACGGCACCAAGACTCTGCCGGCCGCCGAAGCCCTGCCGGCCGCGGTCACGCCGTTTCC
CGACCTGAGCGACGTGCGCGGACAAGCGCAGGCGCGACGCGCCTTGGAAATCGCCGCTGCCGGCCACCACCACCTGCTGC
TGATCGGCAGCCCGGGTTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCGGCATCCTGCCCGAGACCAGCGAGGCCGAG
GCGCTGGAAGCGGCGGCGATCGCCTCGGTCAGCGGGCGCGGCCTGGACCCGGCGCGCTGGCGGCAACGCCCCTACCGATC
CCCGCACCACACCGCCAGCGCGGTGTCGCTGGTCGGCGGCGGCACCCACCCGCGCCCCGGCGAGATCTCGCTGGCGCATC
GCGGCGTGTTGTTCCTCGACGAGTTGCCCGAGTGGAACCGGCACGCCCTGGAAGTGCTGCGCGAGCCGCTGGAATCGGGC
ACGGTCACGGTGTCGCGGGCCGCGCGCAGCGCCGAATTCCCGGCTCGCTTCCAGTTGGTCGCGGCGATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGACGCCAGCGGCCGTTGCCGCTGCAGCGACGACAGCATCCGCCGCTATCGCGCGCGCATCTCCG
GTCCGTTGCTGGACCGCATCGACCTGCACGTGGACGTACCGCGACTGCCGCCGCAGGCATTGCGCGCCGATGCCGCTCCC
GGCGAAAGCAGCGCCGCCGTGCGCGCCCGGGTGGAACTGGCACGGCAACGCCAGCTGGCGCGCGCCGGCTGCCCCAACGG
CCAGCTCGGCCACAGCGAGACCCTGCGCGACTGCCGCCTGCAACCGCGCGACGAAGCGCTGCTGGAACACGCCATCGACC
GCCTGCGCCTGTCGGCGCGCTCGCTGCACCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGCCGGCAGCGACGCG
ATCGCCACCGCGCACCTGACCGAAGCGATCGGTTACAGGCACCTGGACCGCGGTGAGGCACCATTGGCGCGCAGCGCCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K3A1U7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.513

98.617

0.557
  comM Vibrio campbellii strain DS40M4

54.582

99.209

0.542
  comM Haemophilus influenzae Rd KW20

53.968

99.605

0.538
  comM Glaesserella parasuis strain SC1401

53.175

99.605

0.53
  comM Legionella pneumophila str. Paris

50.397

99.605

0.502
  comM Legionella pneumophila strain ERS1305867

50.397

99.605

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.773

100

0.449