Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LJX92_RS26085 Genome accession   NZ_CP086206
Coordinates   5817433..5818929 (+) Length   498 a.a.
NCBI ID   WP_005792457.1    Uniprot ID   A0A7S7S4U3
Organism   Pseudomonas sp. HN8-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5812433..5823929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJX92_RS26055 (LJX92_26085) - 5812867..5813562 (+) 696 WP_228309121.1 HAD family hydrolase -
  LJX92_RS26060 (LJX92_26090) sutA 5813751..5814083 (-) 333 WP_032878753.1 transcriptional regulator SutA -
  LJX92_RS26065 (LJX92_26095) - 5814186..5814611 (-) 426 WP_005792453.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LJX92_RS26070 (LJX92_26100) - 5814821..5816158 (-) 1338 WP_032878752.1 ammonium transporter -
  LJX92_RS26075 (LJX92_26105) glnK 5816193..5816531 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  LJX92_RS26080 (LJX92_26110) - 5816954..5817217 (+) 264 WP_005792456.1 accessory factor UbiK family protein -
  LJX92_RS26085 (LJX92_26115) comM 5817433..5818929 (+) 1497 WP_005792457.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LJX92_RS26090 (LJX92_26120) - 5818936..5819511 (-) 576 WP_032878749.1 TetR/AcrR family transcriptional regulator -
  LJX92_RS26095 (LJX92_26125) - 5819624..5820538 (+) 915 WP_228309122.1 ABC transporter six-transmembrane domain-containing protein -
  LJX92_RS27180 - 5820542..5821402 (-) 861 WP_372804228.1 methyl-accepting chemotaxis protein -
  LJX92_RS27185 - 5821445..5822518 (-) 1074 Protein_5150 Cache 3/Cache 2 fusion domain-containing protein -
  LJX92_RS26105 (LJX92_26135) - 5822696..5823616 (-) 921 WP_078822626.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53416.57 Da        Isoelectric Point: 8.1015

>NTDB_id=623687 LJX92_RS26085 WP_005792457.1 5817433..5818929(+) (comM) [Pseudomonas sp. HN8-3]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYRSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPNRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREVTALSPSQQA
GDTTAQASAQVAQARERQHQRQGCANAFLDLPRLREHCQLTKADESWLESACERLTLSLRAAHRLLKVARTLADLEQVEG
IARHHLAEALQYRPAAHG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=623687 LJX92_RS26085 WP_005792457.1 5817433..5818929(+) (comM) [Pseudomonas sp. HN8-3]
ATGTCCCTCGCTATCGTGCACAGCCGCGCCCAGGTCGGCGTTGAAGCCCCCGCCGTCACCGTTGAAGTGCATATGGCCAA
TGGCTTGCCATCGCTGACGCTGGTGGGCCTGCCGGAAACTGCAGTGAAGGAAAGCAAGGATCGCGTTCGCAGCGCCATTC
TCAACTCGGCGCTGCAATACCCGGCCCGGCGCATCACCCTCAATCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGC
TTTGATCTGGCGATTGCCCTGGGGATCCTGGCGGCCAGTGTGCAAGTGCCGGCCTTGATGCTTGATGACGTGGAGTGCCT
TGGTGAGTTGGCGTTATCGGGCGAAGTACGGGCGGTGAAGGGTGTGTTGCCGGCCGCGCTTGCGGCGCGCAAGGCCGGGC
GCACCGTGATAGTGCCCAGGGCCAATGCCGAGGAAGCCTGCCTGGCGTCGGGGCTCAAAGTGATTGCGGTGGACCACCTG
CTGCAAGTGGTGGCGCACCTTAATGGGCATGTGCCGATTGAGCCCTACAGGTCCGACGGCTTGCTGTACTTGAACAAGCC
TTACCCGGACCTGAGTGAAGTGCAGGGCCAACTGGCAGCCAAGCGGGCCTTGCTGATTGCGGCGGCCGGCGCACATAACC
TGCTGTTCAGCGGGCCACCCGGTACCGGCAAAACCCTGTTGGCCAGCCGCCTGCCGGGCTTGCTGCCACCGCTGAGCGAG
CAGGAGGCGCTGGAAGTGGCCGCGATCCAATCCGTGGTCAGCCTGGCCCCCCTGAGCCATTGGCCCAATCGCCCGTTCCG
CCAGCCGCACCACTCGGCATCCGGCCCGGCGCTGGTGGGTGGCGGCTCGAAGCCGCAGCCGGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTGGATGAGCTGCCGGAATTTGATCGCAAGGTACTGGAGGTGCTGCGCGAGCCATTGGAGTCG
GGGCATATCGTGATCTCCCGAGCCAGGGACCGGGTGAGTTTCCCGGCACGCTTCCAATTGGTCGCGGCCATGAACCCCTG
CCCGTGCGGCTACATGGGCGAACCCAGCGGGCGTTGTCGGTGCACGCCGGAACAGATACAACGCTATCGCAACAAGCTAT
CCGGGCCGCTGCTGGACCGGATTGATTTGCACCTGACAGTCGCGCGGGAGGTCACTGCGCTGAGCCCCTCCCAACAGGCC
GGTGACACCACCGCGCAAGCGTCCGCCCAGGTGGCGCAAGCCCGTGAACGCCAGCACCAGCGCCAGGGTTGTGCCAATGC
ATTCCTCGATCTGCCACGGCTACGCGAACACTGCCAGTTGACCAAAGCCGATGAAAGCTGGCTGGAAAGCGCGTGCGAAC
GACTGACATTATCGCTGCGTGCAGCCCATCGGTTGCTCAAGGTGGCTCGCACCCTGGCGGACCTTGAGCAAGTGGAAGGC
ATCGCCCGCCATCATTTGGCGGAGGCGTTGCAGTACCGACCAGCCGCTCATGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7S4U3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.768

99.398

0.564
  comM Glaesserella parasuis strain SC1401

55.689

100

0.56
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

55

100

0.552
  comM Legionella pneumophila str. Paris

50.4

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.4

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.429

100

0.47