Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LJX92_RS05890 | Genome accession | NZ_CP086206 |
| Coordinates | 1340517..1341575 (+) | Length | 352 a.a. |
| NCBI ID | WP_005785454.1 | Uniprot ID | A0A0R3ALL9 |
| Organism | Pseudomonas sp. HN8-3 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1312909..1341575 | 1340517..1341575 | within | 0 |
Gene organization within MGE regions
Location: 1312909..1341575
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJX92_RS05705 (LJX92_05715) | - | 1312909..1313397 (-) | 489 | WP_032877518.1 | Panacea domain-containing protein | - |
| LJX92_RS05710 (LJX92_05720) | - | 1313631..1314374 (+) | 744 | WP_177327421.1 | LexA family transcriptional regulator | - |
| LJX92_RS05715 (LJX92_05725) | - | 1314965..1315303 (+) | 339 | WP_005785384.1 | phage holin family protein | - |
| LJX92_RS05720 (LJX92_05730) | - | 1315327..1315842 (+) | 516 | WP_078820417.1 | hypothetical protein | - |
| LJX92_RS05725 (LJX92_05735) | - | 1315846..1316457 (+) | 612 | WP_060767087.1 | phage baseplate assembly protein V | - |
| LJX92_RS05730 (LJX92_05740) | - | 1316467..1316799 (+) | 333 | WP_148852484.1 | phage baseplate protein | - |
| LJX92_RS05735 (LJX92_05745) | - | 1316796..1317791 (+) | 996 | WP_228309399.1 | baseplate J/gp47 family protein | - |
| LJX92_RS05740 (LJX92_05750) | - | 1317788..1318426 (+) | 639 | WP_228309400.1 | phage tail protein I | - |
| LJX92_RS05745 (LJX92_05755) | - | 1318423..1318953 (+) | 531 | WP_228309401.1 | phage tail protein | - |
| LJX92_RS05750 (LJX92_05760) | - | 1319007..1319759 (+) | 753 | WP_005785395.1 | hypothetical protein | - |
| LJX92_RS05755 (LJX92_05765) | - | 1319769..1320005 (+) | 237 | WP_005785396.1 | tail fiber assembly protein | - |
| LJX92_RS05760 (LJX92_05770) | - | 1320096..1320269 (+) | 174 | WP_003189022.1 | hypothetical protein | - |
| LJX92_RS05765 (LJX92_05775) | - | 1320272..1321438 (+) | 1167 | WP_228309402.1 | phage tail protein | - |
| LJX92_RS05770 (LJX92_05780) | - | 1321438..1321944 (+) | 507 | WP_005785401.1 | phage major tail tube protein | - |
| LJX92_RS05775 (LJX92_05785) | - | 1322125..1322697 (+) | 573 | WP_228309403.1 | phage tail assembly protein | - |
| LJX92_RS05780 (LJX92_05790) | - | 1322825..1324363 (+) | 1539 | WP_228309404.1 | tail tape measure protein | - |
| LJX92_RS05785 (LJX92_05795) | - | 1324363..1324746 (+) | 384 | WP_005785407.1 | phage tail protein | - |
| LJX92_RS05790 (LJX92_05800) | - | 1324739..1324951 (+) | 213 | WP_005785409.1 | tail protein X | - |
| LJX92_RS05795 (LJX92_05805) | - | 1324961..1325971 (+) | 1011 | WP_103733419.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| LJX92_RS05800 (LJX92_05810) | - | 1326034..1326231 (+) | 198 | WP_228309405.1 | hypothetical protein | - |
| LJX92_RS05805 (LJX92_05815) | - | 1326324..1326815 (+) | 492 | WP_005785416.1 | phage tail tube protein | - |
| LJX92_RS05810 (LJX92_05820) | - | 1326824..1327174 (+) | 351 | WP_005785418.1 | phage tail assembly chaperone family protein, TAC | - |
| LJX92_RS05815 (LJX92_05825) | - | 1327204..1327458 (+) | 255 | WP_032803291.1 | hypothetical protein | - |
| LJX92_RS05820 (LJX92_05830) | - | 1327521..1328744 (+) | 1224 | WP_078820431.1 | phage tail tape measure C-terminal domain-containing protein | - |
| LJX92_RS05825 (LJX92_05835) | - | 1328773..1329111 (+) | 339 | WP_005785426.1 | phage tail protein | - |
| LJX92_RS05830 (LJX92_05840) | - | 1329163..1329846 (+) | 684 | WP_057021849.1 | phage minor tail protein L | - |
| LJX92_RS05835 (LJX92_05845) | - | 1329849..1330622 (+) | 774 | WP_005785430.1 | C40 family peptidase | - |
| LJX92_RS05840 (LJX92_05850) | - | 1330656..1331285 (+) | 630 | WP_005785432.1 | tail assembly protein | - |
| LJX92_RS05845 (LJX92_05855) | - | 1331282..1331941 (+) | 660 | WP_228309406.1 | tail assembly protein | - |
| LJX92_RS05850 (LJX92_05860) | - | 1332001..1335942 (+) | 3942 | WP_228309407.1 | phage tail protein | - |
| LJX92_RS05855 (LJX92_05865) | - | 1335939..1336334 (+) | 396 | WP_228309408.1 | hypothetical protein | - |
| LJX92_RS05860 (LJX92_05870) | - | 1336334..1337065 (+) | 732 | WP_228309409.1 | hypothetical protein | - |
| LJX92_RS05865 (LJX92_05875) | - | 1338164..1338511 (+) | 348 | WP_228309410.1 | hypothetical protein | - |
| LJX92_RS05870 (LJX92_05880) | - | 1338508..1338720 (+) | 213 | WP_228309411.1 | hypothetical protein | - |
| LJX92_RS05875 (LJX92_05885) | - | 1338917..1339342 (+) | 426 | WP_228309412.1 | structural protein | - |
| LJX92_RS05880 (LJX92_05890) | - | 1339378..1339851 (+) | 474 | WP_228309895.1 | lysis system i-spanin subunit Rz | - |
| LJX92_RS05885 (LJX92_05895) | - | 1339933..1340433 (+) | 501 | WP_034126488.1 | CinA family protein | - |
| LJX92_RS05890 (LJX92_05900) | recA | 1340517..1341575 (+) | 1059 | WP_005785454.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37624.19 Da Isoelectric Point: 5.2997
>NTDB_id=623670 LJX92_RS05890 WP_005785454.1 1340517..1341575(+) (recA) [Pseudomonas sp. HN8-3]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDEMEEADTDI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDEMEEADTDI
Nucleotide
Download Length: 1059 bp
>NTDB_id=623670 LJX92_RS05890 WP_005785454.1 1340517..1341575(+) (recA) [Pseudomonas sp. HN8-3]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAGACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAAAAGATGGGCGCCACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAAAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACTCGCGTCAAGGTTGTGAAGAACAAAGTGGCCCCGCCATTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGTGTACTGCACGGTTTCGTCGAAAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGATATCGCTGCCACGCTTGAGAAG
CAGATTCGCGACAAGCTGCTGACCCCGGCGCCGGACGTGAAAGCTGCCGCTAACCGCGAGCCGGTTGACGAGATGGAAGA
AGCCGACACTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAGACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAAAAGATGGGCGCCACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAAAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACTCGCGTCAAGGTTGTGAAGAACAAAGTGGCCCCGCCATTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGTGTACTGCACGGTTTCGTCGAAAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGATATCGCTGCCACGCTTGAGAAG
CAGATTCGCGACAAGCTGCTGACCCCGGCGCCGGACGTGAAAGCTGCCGCTAACCGCGAGCCGGTTGACGAGATGGAAGA
AGCCGACACTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.